Treatment outcomes of new tuberculosis patients hospitalized in Kampala, Uganda: a prospective cohort study.

BACKGROUND: In most resource limited settings, new tuberculosis (TB) patients are usually treated as outpatients. We sought to investigate the reasons for hospitalisation and the predictors of poor treatment outcomes and mortality in a cohort of hospitalized new TB patients in Kampala, Uganda. METHODS AND FINDINGS: Ninety-six new TB patients hospitalised between 2003 and 2006 were enrolled and followed for two years. Thirty two were HIV-uninfected and 64 were HIV-infected. Among the HIV-uninfected, the commonest reasons for hospitalization were low Karnofsky score (47%) and need for diagnostic evaluation (25%). HIV-infected patients were commonly hospitalized due to low Karnofsky score (72%), concurrent illness (16%) and diagnostic evaluation (14%). Eleven HIV uninfected patients died (mortality rate 19.7 per 100 person-years) while 41 deaths occurred among the HIV-infected patients (mortality rate 46.9 per 100 person years). In all patients an unsuccessful treatment outcome (treatment failure, death during the treatment period or an unknown outcome) was associated with duration of TB symptoms, with the odds of an unsuccessful outcome decreasing with increasing duration. Among HIV-infected patients, an unsuccessful treatment outcome was also associated with male sex (P = 0.004) and age (P = 0.034). Low Karnofsky score (aHR = 8.93, 95% CI 1.88 - 42.40, P = 0.001) was the only factor significantly associated with mortality among the HIV-uninfected. Mortality among the HIV-infected was associated with the composite variable of CD4 and ART use, with patients with baseline CD4 below 200 cells/µL who were not on ART at a greater risk of death than those who were on ART, and low Karnofsky score (aHR = 2.02, 95% CI 1.02 - 4.01, P = 0.045). CONCLUSION: Poor health status is a common cause of hospitalisation for new TB patients. Mortality in this study was very high and associated with advanced HIV Disease and no use of ART

NIT COVID-19 at WNUT-2020 Task 2: Deep Learning Model RoBERTa for Identify Informative COVID-19 English Tweets

This paper presents the model submitted by the NIT_COVID-19 team for identified informative COVID-19 English tweets at WNUT-2020 Task2. This shared task addresses the problem of automatically identifying whether an English tweet related to informative (novel coronavirus) or not. These informative tweets provide information about recovered, confirmed, suspected, and death cases as well as the location or travel history of the cases. The proposed approach includes pre-processing techniques and pre-trained RoBERTa with suitable hyperparameters for English coronavirus tweet classification. The performance achieved by the proposed model for shared task WNUT 2020 Task2 is 89.14% in the F1-score metric.Comment: 5 pages, one figures, conferenc

My Little Lost Irene

https://digitalcommons.library.umaine.edu/mmb-vp/2201/thumbnail.jp

Identifying Essential Hub Genes and Protein Complexes in Malaria GO Data using Semantic Similarity Measures

Hub genes play an essential role in biological systems because of their interaction with other genes. A vocabulary used in bioinformatics called Gene Ontology (GO) describes how genes and proteins operate. This flexible ontology illustrates the operation of molecular, biological, and cellular processes (Pmol, Pbio, Pcel). There are various methodologies that can be analyzed to determine semantic similarity. Research in this study, we employ the jack-knife method by taking into account 4 well-liked Semantic similarity measures namely Jaccard similarity, Cosine similarity, Pairsewise document similarity, and Levenshtein distance. Based on these similarity values, the protein-protein interaction network (PPI) of Malaria GO (Gene Ontology) data is built, which causes clusters of identical or related protein complexes (Px) to form. The hub nodes of the network are these necessary proteins. We use a variety of centrality measures to establish clusters of these networks in order to determine which node is the most important. The clusters' unique formation makes it simple to determine which class of Px they are allied to.Comment: 23 pages, 15 figure

A Comparative Study on TF-IDF feature Weighting Method and its Analysis using Unstructured Dataset

Text Classification is the process of categorizing text into the relevant categories and its algorithms are at the core of many Natural Language Processing (NLP). Term Frequency-Inverse Document Frequency (TF-IDF) and NLP are the most highly used information retrieval methods in text classification. We have investigated and analyzed the feature weighting method for text classification on unstructured data. The proposed model considered two features N-Grams and TF-IDF on the IMDB movie reviews and Amazon Alexa reviews dataset for sentiment analysis. Then we have used the state-of-the-art classifier to validate the method i.e., Support Vector Machine (SVM), Logistic Regression, Multinomial Naive Bayes (Multinomial NB), Random Forest, Decision Tree, and k-nearest neighbors (KNN). From those two feature extractions, a significant increase in feature extraction with TF-IDF features rather than based on N-Gram. TF-IDF got the maximum accuracy (93.81%), precision (94.20%), recall (93.81%), and F1-score (91.99%) value in Random Forest classifier.Comment: 10 pages, 3 figures, COLINS-2021, 5th International Conference on Computational Linguistics and Intelligent Systems, April 22-23, 2021, Kharkiv, Ukrain

Analyzing and Comparing Omicron Lineage Variants Protein-Protein Interaction Network using Centrality Measure

The Worldwide spread of the Omicron lineage variants has now been confirmed. It is crucial to understand the process of cellular life and to discover new drugs need to identify the important proteins in a protein interaction network (PPIN). PPINs are often represented by graphs in bioinformatics, which describe cell processes. There are some proteins that have significant influences on these tissues, and which play a crucial role in regulating them. The discovery of new drugs is aided by the study of significant proteins. These significant proteins can be found by reducing the graph and using graph analysis. Studies examining protein interactions in the Omicron lineage (B.1.1.529) and its variants (BA.5, BA.4, BA.3, BA.2, BA.1.1, BA.1) are not yet available. Studying Omicron has been intended to find a significant protein. 68 nodes represent 68 proteins and 52 edges represent the relationship among the protein in the network. A few entrality measures are computed namely page rank centrality (PRC), degree centrality (DC), closeness centrality (CC), and betweenness centrality (BC) together with node degree and Local Clustering Co-efficient (LCC). We also discover 18 network clusters using Markov clustering. 8 significant proteins (candidate gene of Omicron lineage variants) were detected among the 68 proteins, including AHSG, KCNK1, KCNQ1, MAPT, NR1H4, PSMC2, PTPN11 and, UBE21 which scored the highest among the Omicron proteins. It is found that in the variant of Omicron protein-protein interaction networks, the MAPT protein's impact is the most significant.Comment: 14 pages, 15 figures, SN Computer Scienc