Attribute Controlled Reconstruction and Adaptive Mathematical Morphology

ISBN : 978-3-642-38293-2International audienceIn this paper we present a reconstruction method controlled by the evolution of attributes. The process begins from a marker, propagated over increasing quasi-flat zones. The evolution of several increasing and non-increasing attributes is studied in order to select the appropriate region. Additionally, the combination of attributes can be used in a straightforward way. To demonstrate the performance of our method, three applications are presented. Firstly, our method successfully segments connected objects in range images. Secondly, input-adaptive structuring elements (SE) are defined computing the controlled propagation for each pixel on a pilot image. Finally, input-adaptive SE are used to assess shape features on the image. Our approach is multi-scale and auto-dual. Compared with other methods, it is based on a given attribute but does not require a size parameter in order to determine appropriate regions. It is useful to extract objects of a given shape. Additionally, our reconstruction is a connected operator since quasi-flat zones do not create new contours on the image

The melting curve of Ni to 1 Mbar

International audienceThe melting curve of Ni has been determined to 125 GPa using laser-heated diamond anvil cell (LH-DAC) experiments in which two melting criteria were used: firstly, the appearance of liquid diffuse scattering (LDS) during in situ X-ray diffraction (XRD) and secondly, plateaux in temperature vs. laser power functions in both in situ and off-line experiments. Our new melting curve, defined by a Simon–Glatzel fit to the data where T M ( K ) = [ ( P M 18.78 ± 10.20 + 1 ) ] 1 / 2.42 ± 0.66 × 1726 , is in good agreement with the majority of the theoretical studies on Ni melting and matches closely the available shock wave melting data. It is however dramatically steeper than the previous off-line LH-DAC studies in which determination of melting was based on the visual observation of motion aided by the laser speckle method. We estimate the melting point ( T M ) of Ni at the inner-core boundary (ICB) pressure of 330 GPa to be T M = 5800 ± 700 K ( 2 σ ) , within error of the value for Fe of T M = 6230 ± 500 K determined in a recent in situ LH-DAC study by similar methods to those employed here. This similarity suggests that the alloying of 5–10 wt.% Ni with the Fe-rich core alloy is unlikely to have any significant effect on the temperature of the ICB, though this is dependent on the details of the topology of the Fe–Ni binary phase diagram at core pressures. Our melting temperature for Ni at 330 GPa is ∼2500 K higher than that found in previous experimental studies employing the laser speckle method. We find that those earlier melting curves coincide with the onset of rapid sub-solidus recrystallization, suggesting that visual observations of motion may have misinterpreted dynamic recrystallization as convective motion of a melt. This finding has significant implications for our understanding of the high-pressure melting behaviour of a number of other transition metals

The genetic architecture of low-temperature adaptation in the wine yeast Saccharomyces cerevisiae

[Background] Low-temperature growth and fermentation of wine yeast can enhance wine aroma and make them highly desirable traits for the industry. Elucidating response to cold in Saccharomyces cerevisiae is, therefore, of paramount importance to select or genetically improve new wine strains. As most enological traits of industrial importance in yeasts, adaptation to low temperature is a polygenic trait regulated by many interacting loci.[Results] In order to unravel the genetic determinants of low-temperature fermentation, we mapped quantitative trait loci (QTLs) by bulk segregant analyses in the F13 offspring of two Saccharomyces cerevisiae industrial strains with divergent performance at low temperature. We detected four genomic regions involved in the adaptation at low temperature, three of them located in the subtelomeric regions (chromosomes XIII, XV and XVI) and one in the chromosome XIV. The QTL analysis revealed that subtelomeric regions play a key role in defining individual variation, which emphasizes the importance of these regions’ adaptive nature.[Conclusions] The reciprocal hemizygosity analysis (RHA), run to validate the genes involved in low-temperature fermentation, showed that genetic variation in mitochondrial proteins, maintenance of correct asymmetry and distribution of phospholipid in the plasma membrane are key determinants of low-temperature adaptation.This work has been financially supported from the Spanish Government through MINECO and FEDER funds (AGL2013-47300-C3-3-R and PCIN-2015-143 grants) and from Generalitat Valenciana through PROMETEOII/2014/042 grant, awarded to JMG. This study has been carried out in the context of the European Project ERA-IB “YeastTempTation” EGR thanks the Spanish government for an FPI grant BES-2011-044498 and MM also thanks the Generalitat Valenciana for a VALi+d ACIF/2015/194 grant. We acknowledge support of the publication fee by the CSIC Open Access Publication Support Initiative through its Unit of Information Resources for Research (URICI).Peer reviewe

Boron isotopes in foraminifera : systematics, biomineralisation, and CO2 reconstruction

Funding: Fellowship from University of St Andrews, $100 (pending) from Richard Zeebe, UK NERC grants NE/N003861/1 and NE/N011716/1.The boron isotope composition of foraminifera provides a powerful tracer for CO2 change over geological time. This proxy is based on the equilibrium of boron and its isotopes in seawater, which is a function of pH. However while the chemical principles underlying this proxy are well understood, its reliability has previously been questioned, due to the difficulty of boron isotope (δ11B) analysis on foraminferal samples and questions regarding calibrations between δ11B and pH. This chapter reviews the current state of the δ11B-pH proxy in foraminfera, including the pioneering studies that established this proxy’s potential, and the recent work that has improved understanding of boron isotope systematics in foraminifera and applied this tracer to the geological record. The theoretical background of the δ11B-pH proxy is introduced, including an accurate formulation of the boron isotope mass balance equations. Sample preparation and analysis procedures are then reviewed, with discussion of sample cleaning, the potential influence of diagenesis, and the strengths and weaknesses of boron purification by column chromatography versus microsublimation, and analysis by NTIMS versus MC-ICPMS. The systematics of boron isotopes in foraminifera are discussed in detail, including results from benthic and planktic taxa, and models of boron incorporation, fractionation, and biomineralisation. Benthic taxa from the deep ocean have δ11B within error of borate ion at seawater pH. This is most easily explained by simple incorporation of borate ion at the pH of seawater. Planktic foraminifera have δ11B close to borate ion, but with minor offsets. These may be driven by physiological influences on the foraminiferal microenvironment; a novel explanation is also suggested for the reduced δ11B-pH sensitivities observed in culture, based on variable calcification rates. Biomineralisation influences on boron isotopes are then explored, addressing the apparently contradictory observations that foraminifera manipulate pH during chamber formation yet their δ11B appears to record the pH of ambient seawater. Potential solutions include the influences of magnesium-removal and carbon concentration, and the possibility that pH elevation is most pronounced during initial chamber formation under favourable environmental conditions. The steps required to reconstruct pH and pCO2 from δ11B are then reviewed, including the influence of seawater chemistry on boron equilibrium, the evolution of seawater δ11B, and the influence of second carbonate system parameters on δ11B-based reconstructions of pCO2. Applications of foraminiferal δ11B to the geological record are highlighted, including studies that trace CO2 storage and release during recent ice ages, and reconstructions of pCO2 over the Cenozoic. Relevant computer codes and data associated with this article are made available online.Publisher PDFPeer reviewe

A new scenario for the Domerian-Toarcian transition

Pour tenter de mieux comprendre l’événement d’anoxie océanique globale au Toarcien inférieur, il convient de remonter aux changements environnementaux qui ont précédé cette phase paroxysmale. En effet, la comparaison des séquences sédimentaires et biostratigraphiques du passage Domérien-Toarcien entre la Téthys occidentale (Maroc, Espagne, Portugal) et l’Europe du Nord-Ouest (Causses, Allemagne, Angleterre) fait apparaître une importante lacune dans la région septentrionale. La faune d’Arieticeratinae (Emaciaticeras, Canavaria, Fontanelliceras) et d’Harpoceratinae (Lioceratoides, Neolioceratoides), accompagnée ensuite de Dactylioceras particuliers (groupe mirabile-polymorphum = sous-genre Eodactylites), fait presque totalement défaut en Europe du Nord-Ouest, alors qu’elle abonde dans les dernières alternances marno-calcaires, sans changement lithologique notable avec le Domérien des coupes téthysiennes. Cette faune est intercalée entre les derniers Pleuroceras et les Dactylioceras du groupe tenuicostatum. Ces derniers apparaissent dans les argiles succédant immédiatement au dernier banc calcaire à Dactylioceras mirabile au Portugal notamment. C’est là le diachronisme déjà reconnu entre les limites lithostratigraphique (disparition des bancs calcaires) et biostratigraphique (apparition du genre Dactylioceras) au passage Domérien-Toarcien. Cette observation peut s’intégrer dans un nouveau scénario paléo-océanographique prenant en compte à la fois la tendance régressive majeure du Domérien supérieur (conduisant à une lacune régionale importante), l’abondance de matière charbonneuse dans les premiers dépôts transgressifs du Toarcien et l’événement anoxique global subséquent. Dans la partie supérieure du Domérien, l’existence d’un fort volcanisme peut être déduite des données relatives aux variations des isotopes du strontium [McArthur et al., 2000]. A ce pic de strontium sont associées une faible anomalie négative du δ13 C à la limite Domérien-Toarcien et des valeurs particulièrement élevées du δ18 O [Morettini et Bartolini, 1999]. Nous pensons que cette activité volcanique débute par des émissions massives de SO2 induisant des pluies acides, un obscurcissement et un refroidissement. A cette phase de refroidissement correspond une augmentation de l’englacement des pôles et une régression responsable de la lacune majeure évoquée plus haut, particulièrement sensible dans les mers épicontinentales. Bien que les preuves directes d’une glaciation fini-domérienne fassent actuellement défaut [Hallam, 2001], le glacio-eustatisme nous semble le seul mécanisme permettant d’expliquer une oscillation marine importante mais de courte durée [Brandt, 1986 ; Dewey et Pitman, 1998]. En effet, le cycle régression-transgression s’étale sur environ deux zones d’ammonites, la lacune sédimentaire en elle-même recouvrant essentiellement les sous-zones à Elisa et Mirabile. Ce premier épisode serait suivi, dans la zone à Tenuicostatum, par une importante perturbation du cycle du carbone responsable d’un effet de serre. Le réchauffement, provoquerait alors la transgression bien connue du Toarcien inférieur, cachetant le hiatus sédimentaire dans la province nord-ouest européenne. L’intervalle de temps correspondant à cette lacune aurait permis à la végétation de coloniser les immenses surfaces nouvellement émergées. C’est le lessivage et l’oxydation de la matière organo-humique et bactérienne accumulée pendant cette période, associée à une élévation de la température, qui aurait enclenché le mécanisme d’anoxie lors du paroxysme de la transgression

Durability improvement of wood by treatment with Methyl Alkenoate Succinic Anhydrides (M-ASA) of vegetable origin

Methyl Alkenoate Succinic Anhydride (M-ASA) is the product of the reaction between methyl esters of fatty acids and maleic anhydride. Crude M-ASA was synthesized from rapeseed oil methyl esters. The main compounds in this adduct are methyl oleate succinic anhydride (30%), methyl linoleate succinic anhydride (24%), unreacted methyl esters (41%) and unreacted maleic anhydride (4%). The treatment of wood at high temperature with crude M-ASA conferred protection against fungal decay and insects. Biological tests were carried out on Scots pine (Pinus sylvestris) sapwood and beech (Fagus sylvatica) according to European standards. M-ASA treatment was efficient against mould fungi (BS 3900), blue staining (EN 152), white and brown rot fungi (EN 113), longhorn beetle larvae (EN 46 and 47) and termites (EN 117). This treatment delayed the degradation of wood by soft rot (ENV 807) but it did not prevent it. Therefore, M-ASA combines all the necessary conditions to fulfil the requirements of the biological use classes 2 and 3, but not for class 4

Patterns of eukaryotic diversity from the surface to the deep-ocean sediment

Remote deep-ocean sediment (DOS) ecosystems are among the least explored biomes on Earth. Genomic assessments of their biodiversity have failed to separate indigenous benthic organisms from sinking plankton. Here, we compare global-scale eukaryotic DNA metabarcoding datasets (18S-V9) from abyssal and lower bathyal surficial sediments and euphotic and aphotic ocean pelagic layers to distinguish plankton from benthic diversity in sediment material. Based on 1685 samples collected throughout the world ocean, we show that DOS diversity is at least threefold that in pelagic realms, with nearly two-thirds represented by abundant yet unknown eukaryotes. These benthic communities are spatially structured by ocean basins and particulate organic carbon (POC) flux from the upper ocean. Plankton DNA reaching the DOS originates from abundant species, with maximal deposition at high latitudes. Its seafloor DNA signature predicts variations in POC export from the surface and reveals previously overlooked taxa that may drive the biological carbon pump

Acute partial Budd-Chiari syndrome and portal vein thrombosis in cytomegalovirus primary infection: a case report

BACKGROUND: Splanchnic vein thrombosis may complicate inherited thrombotic disorders. Acute cytomegalovirus infection is a rare cause of acquired venous thrombosis in the portal or mesenteric territory, but has never been described extending into a main hepatic vein. CASE PRESENTATION: A 36-year-old immunocompetent woman presented with acute primary cytomegalovirus infection in association with extensive thrombosis in the portal and splenic vein. In addition, a fresh thrombus was evident in the right hepatic vein. A thorough evaluation for a hypercoagulable state was negative. The clinical course, biological evolution, radiological and histological findings were consistent with cytomegalovirus hepatitis complicated by a partial acute Budd-Chiari syndrome and portal thrombosis. Therapeutic anticoagulation was associated with a slow clinical improvement and partial vascular recanalization. CONCLUSION: We described in details a new association between cytomegalovirus infection and acute venous thrombosis both in the portal vein and in the right hepatic vein, realizing a partial Budd-Chiari syndrome. One should be aware that this rare thrombotic event may be complicated by partial venous outflow block