The HSV-1 Latency-Associated Transcript Functions to Repress Latent Phase Lytic Gene Expression and Suppress Virus Reactivation from Latently Infected Neurons

open access articleHerpes simplex virus 1 (HSV-1) establishes life-long latent infection within sensory neurons, during which viral lytic gene expression is silenced. The only highly expressed viral gene product during latent infection is the latency-associated transcript (LAT), a non-protein coding RNA that has been strongly implicated in the epigenetic regulation of HSV-1 gene expression. We have investigated LAT-mediated control of latent gene expression using chromatin immunoprecipitation analyses and LAT-negative viruses engineered to express firefly luciferase or β-galactosidase from a heterologous lytic promoter. Whilst we were unable to determine a significant effect of LAT expression upon heterochromatin enrichment on latent HSV-1 genomes, we show that reporter gene expression from latent HSV-1 genomes occurs at a greater frequency in the absence of LAT. Furthermore, using luciferase reporter viruses we have observed that HSV-1 gene expression decreases during long-term latent infection, with a most marked effect during LAT-negative virus infection. Finally, using a fluorescent mouse model of infection to isolate and culture single latently infected neurons, we also show that reactivation occurs at a greater frequency from cultures harbouring LAT-negative HSV-1. Together, our data suggest that the HSV-1 LAT RNA represses HSV-1 gene expression in small populations of neurons within the mouse TG, a phenomenon that directly impacts upon the frequency of reactivation and the maintenance of the transcriptionally active latent reservoir

Magnetic behaviour of multisegmented FeCoCu/Cu electrodeposited nanowires

Understanding the magnetic behaviour of multisegmented nanowires (NWs) is a major key for the application of such structures in future devices. In this work, magnetic/non-magnetic arrays of FeCoCu/Cu multilayered NWs electrodeposited in nanoporous alumina templates are studied. Contrarily to most reports on multilayered NWs, the magnetic layer thickness was kept constant (30 nm) and only the non-magnetic layer thickness was changed (0 to 80 nm). This allowed us to tune the interwire and intrawire interactions between the magnetic layers in the NW array creating a three-dimensional (3D) magnetic system without the need to change the template characteristics. Magnetic hysteresis loops, measured with the applied field parallel and perpendicular to the NWs' long axis, showed the effect of the non-magnetic Cu layer on the overall magnetic properties of the NW arrays. In particular, introducing Cu layers along the magnetic NW axis creates domain wall nucleation sites that facilitate the magnetization reversal of the wires, as seen by the decrease in the parallel coercivity and the reduction of the perpendicular saturation field. By further increasing the Cu layer thickness, the interactions between the magnetic segments, both along the NW axis and of neighbouring NWs, decrease, thus rising again the parallel coercivity and the perpendicular saturation field. This work shows how one can easily tune the parallel and perpendicular magnetic properties of a 3D magnetic layer system by adjusting the non-magnetic layer thickness

Distinguishing nanowire and nanotube formation by the deposition current transients

AbstractHigh aspect ratio Ni nanowires (NWs) and nanotubes (NTs) were electrodeposited inside ordered arrays of self-assembled pores (approximately 50 nm in diameter and approximately 50 μm in length) in anodic alumina templates by a potentiostatic method. The current transients monitored during each process allowed us to distinguish between NW and NT formation. The depositions were long enough for the deposited metal to reach the top of the template and form a continuous Ni film. The overfilling process was found to occur in two steps when depositing NWs and in a single step in the case of NTs. A comparative study of the morphological, structural, and magnetic properties of the Ni NWs and NTs was performed using scanning electron microscopy, X-ray diffraction, and vibrating sample magnetometry, respectively.M. P. Proença and C. T. Sousa are thankful to FCT for the doctoral and postdoctoral grants SFRH/BD/43440/2008 and SFRH/BPD/82010/2011, respectively. J. Ventura acknowledges the financial support through FSE/POPH. M Vázquez thanks the Spanish Ministry of Economia y Competitividad, MEC, under project MAT2010-20798-C05-01. J. P. Araújo also thanks the Fundação Gulbenkian for its financial support within the ‘Programa Gulbenkian de Estímulo à Investigação Científica’. The authors acknowledge the funding from FCT through the Associated Laboratory - IN and project PTDC/FIS/105416/2008.Peer Reviewe

Tuning the magnetic properties of multisegmented Ni/Cu electrodeposited nanowires with controllable Ni lengths

The fabrication of segmented Ni/Cu nanowires (NWs), with tunable structural and magnetic properties, is reported. A potentiostatic electrodeposition method with a single electrolytic bath has been used to fabricate multisegmented Ni/Cu NWs inside a highly hexagonally ordered anodic nanoporous alumina membrane, with diameters of 50 nm and Ni segment lengths (L-Ni) tuned from 10 nm up to 140 nm. The x-ray diffraction results evidenced a strong dependence of the Ni NWs crystallographic face-centered-cubic (fcc) texture along the [220] direction on the aspect ratio of the NWs. The magnetic behavior of the multisegmented Ni/Cu NW arrays, as a function of the magnetic field and temperature, is also studied and correlated with their structural and morphological properties. Micromagnetic simulations, together with the experimental results, showed a dominant antiferromagnetic coupling between Ni segments along the wire length for small low aspect-ratio magnetic segments. When increasing the Ni segments' length, the magnetic interactions between these along the wire became stronger, favouring a ferromagnetic coupling. The Curie temperature of the NWs was also found to strongly depend on the Ni magnetic segment length. Particularly the Curie temperature was found to be reduced 75 K for the 20 nm Ni segments, following the finite-size scaling relation with xi(0) = 8.1 angstrom and gamma = 0.48. These results emphasize the advantages of using a template assisted method to electrodeposit multilayer NWs, as it allows an easy tailor of the respective morphological, chemical, structural and magnetic properties

Cobalt ferrite thin films deposited by electrophoresis on p-doped Si substrates

The structural and magnetic properties of cobalt ferrite (CoFe2O4) thin films deposited by electrophoresis on p-doped Si(001) substrates have been characterized. The films were polycrystalline and composed by cobalt ferrite with the cubic spinnel structure. The observed decrease of the coercive field with the sixth power of the grain size was indicative of a competition between the magnetocrystalline anisotropy and the exchange coupling energy, on these randomly oriented nanosized grained films.J. Barbosa and M.P. Proenca gratefully acknowledge a PhD grant from Fundacao para a Ciencia e Tecnologia (SFRH/BD/41913/2007 and SFRH/BD/43440/2008, respectively)

The role of Cu length on the magnetic behaviour of Fe/Cu multi-segmented nanowires

CNPQ - CONSELHO NACIONAL DE DESENVOLVIMENTO CIENTÍFICO E TECNOLÓGICOFAPESP - FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULOA set of multi-segmented Fe/Cu nanowires were synthesized by a two-step anodization process of aluminum substrates and a pulsed electrodeposition technique using a single bath. While both Fe segment length and diameter were kept constant to (30 +/- 7) and (45 +/- 5) nm, respectively, Cu length was varied between (15 +/- 5) and (120 +/- 10) nm. The influence of the non-magnetic layer thickness variation on the nanowire magnetic properties was investigated through first-order reversal curve (FORC) measurements and micromagnetic simulations. Our analysis confirmed that, in the multi-segmented Fe/Cu nanowires with shorter Cu segments, the dipolar coupling between Fe segments controls the nanowire magnetic behavior, and its performance is like that of a homogenous Fe nanowire array of similar dimensions. On the other hand, multi-segmented Fe/Cu nanowires with larger Cu segments act like a collection of non-interacting magnetic entities (along the nanowire axis), and their global behavior is mainly controlled by the neighbor-to-neighbor nanodisc dipolar interactions.87112CNPQ - CONSELHO NACIONAL DE DESENVOLVIMENTO CIENTÍFICO E TECNOLÓGICOFAPESP - FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULOCNPQ - CONSELHO NACIONAL DE DESENVOLVIMENTO CIENTÍFICO E TECNOLÓGICOFAPESP - FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULO234513/2014-4sem informaçãoAgências de fomento estrangeiras apoiaram essa pesquisa, mais informações acesse artig

Tunning pore filling of anodic alumina templates by accurate control of the bottom barrier layer thickness

The role of the alumina barrier layer thickness (delta(b)) on the growth of Ni nanowires (NWs) in porous anodic alumina (PAA) has been revealed. By varying the final anodization voltage to form dendrites at the bottom of the nanoporous structure, we are able to optimize delta(b) (in the 2-16 nm range), allowing us to obtain a Ni pore filling percentage (f(p)) of almost 100% for delta(b) = 10 nm. However, deviations from this optimal delta(b)-value led to a strong decrease of f(p). Moreover, an increase of the electrodeposition efficiency (EE) and NW homogeneity was also verified for delta(b) up to 10 nm. Such increase in nominal delta(b) leads to a consistent growth rate in all pores and consequently a complete and uniform nanopore filling. On the other hand, the decrease in electrodeposition efficiency visible for delta(b) > 10 nm is related with hydrogen evolution and dielectric breakdown of the insulator layer due to the required high deposition voltages. Non-uniform NW growth is then visible, with the consequent decrease in f(p). The control of the pore filling and length homogeneity of the fabricated 1D metallic nanostructures, combined with the ability to adjust the pore dimensions of PAA, can bring novel approaches for the fabrication of nano-objects and thus exciting new applications

Genome-wide association study of male sexual orientation

Family and twin studies suggest that genes play a role in male sexual orientation. We conducted a genome-wide association study (GWAS) of male sexual orientation on a primarily European ancestry sample of 1,077 homosexual men and 1,231 heterosexual men using Affymetrix single nucleotide polymorphism (SNP) arrays. We identified several SNPs with p < 10 -5 , including regions of multiple supporting SNPs on chromosomes 13 (minimum p = 7.5 × 10 -7 ) and 14 (p = 4.7 × 10 -7 ). The genes nearest to these peaks have functions plausibly relevant to the development of sexual orientation. On chromosome 13, SLITRK6 is a neurodevelopmental gene mostly expressed in the diencephalon, which contains a region previously reported as differing in size in men by sexual orientation. On chromosome 14, TSHR genetic variants in intron 1 could conceivably help explain past findings relating familial atypical thyroid function and male homosexuality. Furthermore, skewed X chromosome inactivation has been found in the thyroid condition, Graves' disease, as well as in mothers of homosexual men. On pericentromeric chromosome 8 within our previously reported linkage peak, we found support (p = 4.1 × 10 -3 ) for a SNP association previously reported (rs77013977, p = 7.1 × 10 -8 ), with the combined analysis yielding p = 6.7 × 10 -9 , i.e., a genome-wide significant association

Near real-time security system applied to SDN environments in IoT networks using convolutional neural network

[EN] The Internet of Things (IoT) paradigm brings new and promising possibilities for services and products. The heterogeneity of IoT devices highlights the inefficiency of traditional networks' structures to support their specific requirements due to their lack of flexibility. Thus, Software-defined Networking (SDN) is commonly associated with IoT since this architecture provides a more flexible and manageable network environment. As shown by recent events, IoT devices may be used for large scale Distributed Denial of Service (DDoS) attacks due to their lack of security. This kind of attack is commonly detected and mitigated at the destination-end network but, due to the massive volume of information that IoT botnets generate, this approach is becoming impracticable. We propose in this paper a near real-time SDN security system that both prevents DDoS attacks on the source-end network and protects the sources SDN controller against traffic impairment. For this, we apply and test a Convolutional Neural Network (CNN) for DDoS detection, and describe how the system could mitigate the detected attacks. The performance outcomes were performed in two test scenarios, and the results pointed out that the proposed SDN security system is promising against next-generation DDoS attacks. (C) 2020 Published by Elsevier Ltd.This study was financed in part by the National Council for Scientific and Technological Development (CNPq) of Brazil under Grants 310668/2019-0 and 309335/2017-5; by the Ministerio de Economia y Competitividad in the "Programa Estatal de Fomento de la Investigacion Cientifica y Tecnica de Excelencia, Subprograma Estatal de Generacion de Conocimiento" within the project under Grant TIN2017-84802-C2-1-P; by FCT/MCTES through national funds and when applicable co-funded EU funds under the Project UIDB/EEA/50008/2020; and by the Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES) by the granting of a scholarship through the "Programa de Doutorado Sanduche no Exterior (PDSE) 2019". Finally, this work was supported by Federal University of Parana(UFPR) under Project Banpesq/2014016797.De Assis, MVO.; Carvalho, LF.; Rodrigues, JJPC.; Lloret, J.; Proenca Jr, ML. (2020). Near real-time security system applied to SDN environments in IoT networks using convolutional neural network. Computers & Electrical Engineering. 86:1-16. https://doi.org/10.1016/j.compeleceng.2020.1067381168