Genetic relationships within and among Iberian fescues (Festuca L.) based on PCR-amplified markers

The genus Festuca comprises approximately 450 species and is widely distributed around the world. The Iberian Penninsula, with more than 100 taxa colonizing very diverse habitats, is one of its main centers of diversification. This study was conducted to assess molecular genetic variation and genetic relatedness among 91 populations of 31 taxa of Iberian fescues, based on several molecular markers (random amplified polymorphic DNA, amplified fragment length polymorphisms, and trnL sequences). The analyses showed the paraphyletic origin of the broad-leaved (subgenus Festuca, sections Scariosae and Subbulbosae, and subgenus Schedonorus) and the fine-leaved fescues (subgenus Festuca, sections Aulaxyper, Eskia, and Festuca). Schedonorus showed a weak relationship with Lolium rigidum and appeared to be the most recent of the broad-leaved clade. Section Eskia was the most ancient and Festuca the most recent of the fine-leaved clade. Festuca and Aulaxyper were the most related sections, in concordance with their taxonomic affinities. All taxa grouped into their sections, except F. ampla and F. capillifolia (section Festuca), which appeared to be more closely related to Aulaxyper and to a new independent section, respectively. Most populations clustered at the species level, but some subspecies and varieties mixed their populations. This study demonstrated the value in combining different molecular markers to uncover hidden genetic relationships between populations of Festuca

Spiral-like star-forming patterns in CALIFA early-type galaxies

Based on a combined analysis of SDSS imaging and CALIFA integral field spectroscopy data, we report on the detection of faint (24 < {\mu}$_r$ mag/arcsec$^2$ < 26) star-forming spiral-arm-like features in the periphery of three nearby early-type galaxies (ETGs). These features are of considerable interest because they document the still ongoing inside-out growth of some local ETGs and may add valuable observational insight into the origin and evolution of spiral structure in triaxial stellar systems. A characteristic property of the nebular component in the studied ETGs, classified i+, is a two-radial-zone structure, with the inner zone that displays faint (EW(H\alpha)$\simeq$1{\AA}) low-ionization nuclear emission-line region (LINER) properties, and the outer one (3{\AA}<EW(H\alpha)<~20{\AA}) HII-region characteristics. This spatial segregation of nebular emission in two physically distinct concentric zones calls for an examination of aperture effects in studies of type i+ ETGs with single-fiber spectroscopic data.Comment: Accepted to A&A, 5 pages, 1 figur

Observational hints of radial migration in disc galaxies from CALIFA

Context. According to numerical simulations, stars are not always kept at their birth galactocentric distances but they have a tendency to migrate. The importance of this radial migration in shaping galactic light distributions is still unclear. However, if radial migration is indeed important, galaxies with different surface brightness (SB) profiles must display differences in their stellar population properties. Aims: We investigate the role of radial migration in the light distribution and radial stellar content by comparing the inner colour, age, and metallicity gradients for galaxies with different SB profiles. We define these inner parts, avoiding the bulge and bar regions and up to around three disc scale lengths (type I, pure exponential) or the break radius (type II, downbending; type III, upbending). Methods: We analysed 214 spiral galaxies from the CALIFA survey covering different SB profiles. We made use of GASP2D and SDSS data to characterise the light distribution and obtain colour profiles of these spiral galaxies. The stellar age and metallicity profiles were computed using a methodology based on full-spectrum fitting techniques (pPXF, GANDALF, and STECKMAP) to the Integral Field Spectroscopic CALIFA data. Results: The distributions of the colour, stellar age, and stellar metallicity gradients in the inner parts for galaxies displaying different SB profiles are unalike as suggested by Kolmogorov-Smirnov and Anderson-Darling tests. We find a trend in which type II galaxies show the steepest profiles of all, type III show the shallowest, and type I display an intermediate behaviour. Conclusions: These results are consistent with a scenario in which radial migration is more efficient for type III galaxies than for type I systems, where type II galaxies present the lowest radial migration efficiency. In such a scenario, radial migration mixes the stellar content, thereby flattening the radial stellar properties and shaping different SB profiles. However, in light of these results we cannot further quantify the importance of radial migration in shaping spiral galaxies, and other processes, such as recent star formation or satellite accretion, might play a role

Spectroscopic aperture biases in inside-out evolving early-type galaxies from CALIFA

Integral field spectroscopy studies based on CALIFA data have recently revealed the presence of ongoing low-level star formation (SF) in the periphery of ~10% of local early-type galaxies (ETGs), witnessing a still ongoing inside-out galaxy growth process. A distinctive property of the nebular component in these ETGs, classified i+, is a two-radial-zone structure, with the inner zone displaying LINER emission with a H\alpha equivalent width EW~1{\AA}, and the outer one (3{\AA}<EW<~20{\AA}) showing HII-region characteristics. Using CALIFA IFS data, we empirically demonstrate that the confinement of nebular emission to the galaxy periphery leads to a strong aperture (or, redshift) bias in spectroscopic single-fiber studies of type i+ ETGs: At low redshift (<~0.45), SDSS spectroscopy is restricted to the inner (SF-devoid LINER) zone, thereby leading to their erroneous classification as "retired" galaxies (systems lacking SF and whose faint emission is powered by pAGB stars). Only at higher z's the SDSS aperture can encompass the outer SF zone, permitting their unbiased classification as "composite SF/LINER". We also demonstrate that the principal effect of a decreasing aperture on the classification of i+ ETGs via standard BPT emission-line ratios consists in a monotonic up-right shift precisely along the upper-right wing of the "seagull" distribution. Motivated by these insights, we also investigate theoretically these biases in aperture-limited studies of inside-out growing galaxies as a function of z. To this end, we devise a simple model, which involves an outwardly propagating SF process, that reproduces the radial extent and two-zone EW distribution of i+ ETGs. By simulating on this model the spectroscopic SDSS aperture, we find that SDSS studies at z<~1 are progressively restricted to the inner LINER-zone, and miss an increasingly large portion of the H\alpha-emitting periphery.Comment: Accepted to A&A, 6 pages, 4 figure

Aperture effects on the oxygen abundance determinations from CALIFA data

This paper aims at providing aperture corrections for emission lines in a sample of spiral galaxies from the Calar Alto Legacy Integral Field Area Survey (CALIFA) database. In particular, we explore the behavior of the log([OIII]5007/Hbeta)/([NII]6583/Halpha) (O3N2) and log[NII]6583/Halpha (N2) flux ratios since they are closely connected to different empirical calibrations of the oxygen abundances in star forming galaxies. We compute median growth curves of Halpha, Halpha/Hbeta, O3N2 and N2 up to 2.5R_50 and 1.5 disk R_eff. The growth curves simulate the effect of observing galaxies through apertures of varying radii. The median growth curve of the Halpha/Hbeta ratio monotonically decreases from the center towards larger radii, showing for small apertures a maximum value of ~10% larger than the integrated one. The median growth curve of N2 shows a similar behavior, decreasing from the center towards larger radii. No strong dependence is seen with the inclination, morphological type and stellar mass for these growth curves. Finally, the median growth curve of O3N2 increases monotonically with radius. However, at small radii it shows systematically higher values for galaxies of earlier morphological types and for high stellar mass galaxies. Applying our aperture corrections to a sample of galaxies from the SDSS survey at 0.02<=z<=0.3 shows that the average difference between fiber-based and aperture corrected oxygen abundances, for different galaxy stellar mass and redshift ranges, reaches typically to ~11%, depending on the abundance calibration used. This average difference is found to be systematically biased, though still within the typical uncertainties of oxygen abundances derived from empirical calibrations. Caution must be exercised when using observations of galaxies for small radii (e.g. below 0.5R_eff) given the high dispersion shown around the median growth curves.Comment: Accepted for publication in Ap

Silicon Nanowire Sensors Enable Diagnosis of Patients via Exhaled Breath

Two of the biggest challenges in medicine today are the need to detect diseases in a noninvasive manner and to differentiate between patients using a single diagnostic tool. The current study targets these two challenges by developing a molecularly modified silicon nanowire field effect transistor (SiNW FET) and showing its use in the detection and classification of many disease breathprints (lung cancer, gastric cancer, asthma, and chronic obstructive pulmonary disease). The fabricated SiNW FETs are characterized and optimized based on a training set that correlate their sensitivity and selectivity toward volatile organic compounds (VOCs) linked with the various disease breathprints. The best sensors obtained in the training set are then examined under real-world clinical conditions, using breath samples from 374 subjects. Analysis of the clinical samples show that the optimized SiNW FETs can detect and discriminate between almost all binary comparisons of the diseases under examination with >80% accuracy. Overall, this approach has the potential to support detection of many diseases in a direct harmless way, which can reassure patients and prevent numerous unpleasant investigations

Two-dimensional multi-component photometric decomposition of CALIFA galaxies

We present a two-dimensional multi-component photometric decomposition of 404 galaxies from the Calar Alto Legacy Integral Field Area Data Release 3 (CALIFA-DR3). They represent all possible galaxies with no clear signs of interaction and not strongly inclined in the final CALIFA data release. Galaxies are modelled in the g, r, and i Sloan Digital Sky Survey (SDSS) images including, when appropriate, a nuclear point source, bulge, bar, and an exponential or broken disc component. We use a human-supervised approach to determine the optimal number of structures to be included in the fit. The dataset, including the photometric parameters of the CALIFA sample, is released together with statistical errors and a visual analysis of the quality of each fit. The analysis of the photometric components reveals a clear segregation of the structural composition of galaxies with stellar mass. At high masses (log(M⋆/M⊙) > 11), the galaxy population is dominated by galaxies modelled with a single Sérsic or a bulge+disc with a bulge-to-total (B/T) luminosity ratio B/T > 0.2. At intermediate masses (9.5 < log(M⋆/M⊙) < 11), galaxies described with bulge+disc but B/T < 0.2 are preponderant, whereas, at the low mass end (log(M⋆/M⊙)< 9.5), the prevailing population is constituted by galaxies modelled with either pure discs or nuclear point sources+discs (i.e., no discernible bulge). We obtain that 57% of the volume corrected sample of disc galaxies in the CALIFA sample host a bar. This bar fraction shows a significant drop with increasing galaxy mass in the range 9.5 < log(M⋆/M⊙) < 11.5. The analyses of the extended multi-component radial profile result in a volume-corrected distribution of 62%, 28%, and 10% for the so-called Type I (pure exponential), Type II (down-bending), and Type III (up-bending) disc profiles, respectively. These fractions are in discordance with previous findings. We argue that the different methodologies used to detect the breaks are the main cause for these differences.PostprintPeer reviewe

Measurement of inositol 1,4,5-trisphosphate in living cells using an improved set of resonance energy transfer-based biosensors

Improved versions of inositol-1,4,5-trisphosphate (InsP3) sensors were created to follow intracellular InsP3 changes in single living cells and in cell populations. Similar to previous InsP3 sensors the new sensors are based on the ligand binding domain of the human type-I InsP3 receptor (InsP3R-LBD), but contain a mutation of either R265K or R269K to lower their InsP3 binding affinity. Tagging the InsP3R-LBD with N-terminal Cerulean and C-terminal Venus allowed measurement of Ins P3 in single-cell FRET experiments. Replacing Cerulean with a Luciferase enzyme allowed experiments in multi-cell format by measuring the change in the BRET signal upon stimulation. These sensors faithfully followed the agonist-induced increase in InsP3 concentration in HEK 293T cells expressing the Gq-coupled AT1 angiotensin receptor detecting a response to agonist concentration as low as 10 pmol/L. Compared to the wild type InsP3 sensor, the mutant sensors showed an improved off-rate, enabling a more rapid and complete return of the signal to the resting value of InsP3 after termination of M3 muscarinic receptor stimulation by atropine. For parallel measurements of intracellular InsP3 and Ca2+ levels in BRET experiments, the Cameleon D3 Ca2+ sensor was modified by replacing its CFP with luciferase. In these experiments depletion of plasma membrane PtdIns(4,5)P2 resulted in the fall of InsP3 level, followed by the decrease of the Ca2+-signal evoked by the stimulation of the AT1 receptor. In contrast, when type-III PI 4-kinases were inhibited with a high concentration of wortmannin or a more specific inhibitor, A1, the decrease of the Ca2+-signal preceded the fall of InsP3 level indicating an InsP3-, independent, direct regulation of capacitative Ca2+ influx by plasma membrane inositol lipids. Taken together, our results indicate that the improved InsP3 sensor can be used to monitor both the increase and decrease of InsP3 levels in live cells suitable for high-throughput BRET applications. © 2015, Public Library of Science. All rights reserved

Star formation in the local Universe from the CALIFA sample: I. Calibrating the SFR using integral field spectroscopy data

The star formation rate (SFR) is one of the main parameters used to analyze the evolution of galaxies through time. The need for recovering the light reprocessed by dust commonly requires the use of low spatial resolution far-infrared data. Recombination line luminosities provide an alternative, although uncertain dust-extinction corrections based on narrowband imaging or long-slit spectroscopy have traditionally posed a limit to their applicability. Integral field spectroscopy (IFS) is clearly the way to overcome this kind of limitation. Aims. We obtain integrated Hα, ultraviolet (UV) and infrared (IR)-based SFR measurements for 272 galaxies from the CALIFA survey at 0.005 <z< 0.03 using single-band and hybrid tracers. We aim to determine whether the extinction-corrected Hα luminosities provide a good measure of the SFR and to shed light on the origin of the discrepancies between tracers. Updated calibrations referred to Hα are provided. The well-defined selection criteria and large statistics allow us to carry out this analysis globally and split by properties, including stellar mass and morphological type. Methods. We derive integrated, extinction-corrected Hα fluxes from CALIFA, UV surface and asymptotic photometry from GALEX and integrated WISE 22 μm and IRAS fluxes. Results. We find that the extinction-corrected Hα luminosity agrees with the hybrid updated SFR estimators based on either UV or Hα plus IR luminosity over the full range of SFRs (0.03-20 M yr). The coefficient that weights the amount of energy produced by newly-born stars that is reprocessed by dust on the hybrid tracers, a, shows a large dispersion. However, this coefficient does not became increasingly small at high attenuations, as expected if significant highly-obscured Hα emission were missed, i.e., after a Balmer decrement-based attenuation correction is applied. Lenticulars, early-type spirals, and type-2 AGN host galaxies show smaller coefficients because of the contribution of optical photons and AGN to dust heating. Conclusions. In the local Universe, the Hα luminosity derived from IFS observations can be used to measure SFR, at least in statistically-significant, optically-selected galaxy samples, once stellar continuum absorption and dust attenuation effects are accounted for. The analysis of the SFR calibrations by galaxies properties could potentially be used by other works to study the impact of different selection criteria in the SFR values derived, and to disentangle selection effects from other physically motivated differences, such as environmental or evolutionary effects.The CALIFA collaboration also thanks the CAHA staff for the dedication to this project. C.C.-T. thanks the support of the Spanish Ministerio de Educacion, Cultura y Deporte by means of the FPU fellowship program. The authors also thank the support from the Plan Nacional de Investigacion y Desarrollo funding programs, AYA2012-30717 and AyA2013-46724P, of Spanish Ministerio de Economia y Competitividad (MINECO). P.G.P.-G. acknowledges support from the AYA2012-30717 and AYA2012-31277. J.I.P. acknowledges financial support from the Spanish MINECO under grant AYA2010-21887-C04-01 and from Junta de Andalucia Excellence Project PEX2011-FQM7058. R.A.M. is funded by the Spanish program of International Campus of Excellence Moncloa (CEI). M.A.P.T. acknowledges support from the Spanish MINECO through grant AYA2012-38491-C02-02. A.d.O. acknowledge financial support from the Spanish grant AYA2013-42227-P. Support for L.G. is provided by the Ministry of Economy, Development, and Tourism's Millennium Science Initiative through grant IC120009, awarded to The Millennium Institute of Astrophysics, MAS. L.G. acknowledges support by CONICYT through FONDECYT grant 3140566. J.M.G. acknowledges support from the Fundacao para a Ciencia e a Tecnologia (FCT) through the Fellowship SFRH/BPD/66958/2009 from FCT (Portugal) and POPH/FSE (EC) by FEDER funding through the program Programa Operacional de Factores de Competitividade (COMPETE). J.M.G. also acknowledges support by FCT under project FCOMP-01-0124-FEDER- 029170 (Reference FCT PTDC/FIS-AST/3214/2012), funded by FCT-MEC (PIDDAC) and FEDER (COMPETE).Peer Reviewe

CALIFA : a diameter-selected sample for an integral field spectroscopy galaxy survey

JMA acknowledges support from the European Research Council Starting Grant (SEDmorph; P.I. V. Wild).We describe and discuss the selection procedure and statistical properties of the galaxy sample used by the Calar Alto Legacy Integral Field Area (CALIFA) survey, a public legacy survey of 600 galaxies using integral field spectroscopy. The CALIFA "mother sample" was selected from the Sloan Digital Sky Survey (SDSS) DR7 photometric catalogue to include all galaxies with an r-band isophotal major axis between 45 '' and 79 : 2 '' and with a redshift 0 : 005 M-r > -23 : 1 and over a stellar mass range between 10(9.7) and 10(11.4) M-circle dot. In particular, within these ranges, the diameter selection does not lead to any significant bias against - or in favour of - intrinsically large or small galaxies. Only below luminosities of M-r = -19 (or stellar masses <10(9.7) M-circle dot) is there a prevalence of galaxies with larger isophotal sizes, especially of nearly edge-on late-type galaxies, but such galaxies form <10% of the full sample. We estimate volume-corrected distribution functions in luminosities and sizes and show that these are statistically fully compatible with estimates from the full SDSS when accounting for large-scale structure. For full characterization of the sample, we also present a number of value-added quantities determined for the galaxies in the CALIFA sample. These include consistent multi-band photometry based on growth curve analyses; stellar masses; distances and quantities derived from these; morphological classifications; and an overview of available multi-wavelength photometric measurements. We also explore different ways of characterizing the environments of CALIFA galaxies, finding that the sample covers environmental conditions from the field to genuine clusters. We finally consider the expected incidence of active galactic nuclei among CALIFA galaxies given the existing pre-CALIFA data, finding that the final observed CALIFA sample will contain approximately 30 Sey2 galaxies.Peer reviewe