A noncanonical auxin-sensing mechanism is required for organ morphogenesis in Arabidopsis

Tissue patterning in multicellular organisms is the output of precise spatio–temporal regulation of gene expression coupled with changes in hormone dynamics. In plants, the hormone auxin regulates growth and development at every stage of a plant's life cycle. Auxin signaling occurs through binding of the auxin molecule to a TIR1/AFB F-box ubiquitin ligase, allowing interaction with Aux/IAA transcriptional repressor proteins. These are subsequently ubiquitinated and degraded via the 26S proteasome, leading to derepression of auxin response factors (ARFs). How auxin is able to elicit such a diverse range of developmental responses through a single signaling module has not yet been resolved. Here we present an alternative auxin-sensing mechanism in which the ARF ARF3/ETTIN controls gene expression through interactions with process-specific transcription factors. This noncanonical hormone-sensing mechanism exhibits strong preference for the naturally occurring auxin indole 3-acetic acid (IAA) and is important for coordinating growth and patterning in diverse developmental contexts such as gynoecium morphogenesis, lateral root emergence, ovule development, and primary branch formation. Disrupting this IAA-sensing ability induces morphological aberrations with consequences for plant fitness. Therefore, our findings introduce a novel transcription factor-based mechanism of hormone perception in plants. Note that there is a CORRIGENDUM to this article: http://eprints.whiterose.ac.uk/132306/ http://genesdev.cshlp.org/content/31/17/1821.ful

Role of cellular senescence and NOX4-mediated oxidative stress in systemic sclerosis pathogenesis.

Systemic sclerosis (SSc) is a systemic autoimmune disease characterized by progressive fibrosis of skin and numerous internal organs and a severe fibroproliferative vasculopathy resulting frequently in severe disability and high mortality. Although the etiology of SSc is unknown and the detailed mechanisms responsible for the fibrotic process have not been fully elucidated, one important observation from a large US population study was the demonstration of a late onset of SSc with a peak incidence between 45 and 54 years of age in African-American females and between 65 and 74 years of age in white females. Although it is not appropriate to consider SSc as a disease of aging, the possibility that senescence changes in the cellular elements involved in its pathogenesis may play a role has not been thoroughly examined. The process of cellular senescence is extremely complex, and the mechanisms, molecular events, and signaling pathways involved have not been fully elucidated; however, there is strong evidence to support the concept that oxidative stress caused by the excessive generation of reactive oxygen species may be one important mechanism involved. On the other hand, numerous studies have implicated oxidative stress in SSc pathogenesis, thus, suggesting a plausible mechanism in which excessive oxidative stress induces cellular senescence and that the molecular events associated with this complex process play an important role in the fibrotic and fibroproliferative vasculopathy characteristic of SSc. Here, recent studies examining the role of cellular senescence and of oxidative stress in SSc pathogenesis will be reviewed

Improvement of Mechanical Properties of Soft Soils by Use of a Pre-Loading Embankment

A preloading embankment, and its foundation soil, have been closely monitored in the Po river delta (Italy). After showing that the complete consolidation of the peaty and clayey soil has taken place, the shear strength increase measured with various tests has been considered and analyzed

Effectiveness of distributed temperature measurements for early detection of piping in river embankments

Abstract. Internal erosion is the cause of a significant percentage of failure and incidents involving both dams and river embankments in many countries. In the past 20 years the use of fibre-optic Distributed Temperature Sensing (DTS) in dams has proved to be an effective tool for the detection of leakages and internal erosion. This work investigates the effectiveness of DTS for dike monitoring, focusing on the early detection of backward erosion piping, a mechanism that affects the foundation layer of structures resting on permeable, sandy soils. The paper presents data from a piping test performed on a large-scale experimental dike equipped with a DTS system together with a large number of accompanying sensors. The effect of seepage and piping on the temperature field is analysed, eventually identifying the processes that cause the onset of thermal anomalies around piping channels and thus enable their early detection. Making use of dimensional analysis, the factors that influence this thermal response of a dike foundation are identified. Finally some tools are provided that can be helpful for the design of monitoring systems and for the interpretation of temperature data

Evaluation of dynamic explicit mpm formulations for unsaturated soils

Many applications in geohazards prevention involve large deformations of unsaturated soils, e.g. rainfall induced landslides, embankment collapses due to wetting etc. These phenomena can be investigated with multiphase implementations of the Material Point Method (MPM) able to account for the behaviour of unsaturated soils. This paper compares two formulations: (i) afully coupled three-phase formulation(3P)in which the governing equations are derived from the momentum balance and the mass balance equations of solid, liquid and gas phase assuming non-zero gas pressure,the primary unknowns are the absolute accelerationsof the phases (aS–aL–aG formulation); (ii)a simplified approachthatneglectsthe momentum balance equation of the gas(2P_s).Potentialities and limitations of these approaches are highlighted consideringa 1D infiltration problem.Despite the introduced simplifications, the simplified formulation gives reasonably good results in many engineering cases

Investigation and monitoring to model the interaction between the Scrovegni’s Chapel in Padova (Italy) and the underlying foundation soil

In Padova's historic centre lies the renowned Scrovegni’s Chapel, painted by Giotto in 1303. The local subsoil primarily consists of silty sand with some layers of silt. The crypt beneath acts as a buffer against soil moisture, preventing damage to the frescoes. However, during heavy rain, groundwater rises flowing across the floor and lateral walls, therefore flooding the pavement. A pumping system is eventually activated to mitigate the pavement inundation. Several investigations including geophysical surveys, piezocone tests, and boreholes with soil sampling have been conducted to provide the subsoil geotechnical model and understand the local hydrogeological behaviour. Monitoring systems, such as piezometers, deep extensometers and optical fiber cables, track groundwater levels and long-term soil displacements. The paper aims to characterize the subsoil's stratigraphy, mechanical properties and permeabilities to model how the environmental conditions affect the ancient Chapel and ensure its long-term stability

The application of the Boolean Stochastic Generation Method to model seepage under levees in heterogeneous soils

Soil heterogeneity plays an important role in incrementing the uncertainty about the reliability of geotechnical engineering works, especially levees. The presence of thin layers of soils more permeable than the surrounding matrix significantly changes the seepage flow net below and within the dike. However, the detection of these layers is extremely difficult. Consequently, to evaluate the overall safety of dikes it may be useful to adopt stochastic computation methods. The paper presents the calibration of a seepage model of an operational river embankment subject to sand boils. The levee, located along the Adige River (South Tyrol, Italy), has been monitored since 2016. Piezometers and spot temperature sensors are installed in the lateral banks while a distributed fiber optic sensors (FOS), buried in a 350 m long trench at the toe of the levee, is used to check temperature distribution in the subground. The Boolean Stochastic Generation (BoSG) method addresses the influence of layers of material with different properties with respect of the surrounding soil. 360 soil configurations were generated for a two-dimensional groundwater flow model of the levee and confronted with the monitoring data of two piezometers. This analysis permits to identify the configuration that has effects more congruent with piezometers data, which in this case is a configuration with a major presence of lenses on the waterside respect the field-side. This evidence could guide strategies for remedial works

Potentialities of the combined use of underwater fluorescence imagery and photogrammetry for the detection of fine-scale changes in marine bioconstructors

Marine communities are facing both natural disturbances and anthropogenic stressors. Bioconstructor species are endangered by multiple large-scale and local pressures and the early identification of impacts and damages is a primary goal for preserving coral reefs. Taking advantage of the recent development in underwater photogrammetry, the use of photogrammetry and fluorimetry was coupled to design, test and validate in laboratory a multi-sensor measuring system that could be potentially exploited in open water by SCUBA divers for assessing the health status of corals and detecting relevant biometric parameters with high accuracy and resolution. The approach was tested with fragments of the endemic coral Cladocora caespitosa, the sole zooxanthellate scleractinian reef-builder in the Mediterranean. The most significant results contributing to the scientific advancement of knowledge were: 1) the development of a cost-effective, flexible and easy-to-use approach based on emerging technologies; 2) the achievement of a sub-centimetric resolution for measuring relevant biometric parameters (polyp counting, colony surface areas and volumes); 3) set up of a reliable and repeatable strategy for multi-temporal analyses capable of quantifying changes in coral morphology with sub-centimeter accuracy; 4) detect changes in coral health status at a fine scale and under natural lighting through autofluorescence analysis. The novelty of the present research lies in the coupling of emerging techniques that could be applied to a wide range of 3D morphometrics, different habitats and species, thus paving the way to innovative opportunities in ecological research and more effective results than traditional in-situ measurements. Moreover, the possibility to easily modify the developed system to be installed on an underwater remotely operated vehicle further highlights the possible concrete impact of the research for ecological monitoring and protection purposes