57 research outputs found

    Biogeography of Amazonian fishes: deconstructing river basins as biogeographic units

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    Climate controls over ecosystem metabolism: insights from a fifteen-year inductive artificial neural network synthesis for a subalpine forest

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    Eddy covariance (EC) datasets have provided insight into climate determinants of net ecosystem productivity (NEP) and evapotranspiration (ET) in natural ecosystems for decades, but most EC studies were published in serial fashion such that one study's result became the following study's hypothesis. This approach reflects the hypothetico-deductive process by focusing on previously derived hypotheses. A synthesis of this type of sequential inference reiterates subjective biases and may amplify past assumptions about the role, and relative importance, of controls over ecosystem metabolism. Long-term EC datasets facilitate an alternative approach to synthesis: the use of inductive data-based analyses to re-examine past deductive studies of the same ecosystem. Here we examined the seasonal climate determinants of NEP and ET by analyzing a 15-year EC time-series from a subalpine forest using an ensemble of Artificial Neural Networks (ANNs) at the half-day (daytime/nighttime) time-step. We extracted relative rankings of climate drivers and driver-response relationships directly from the dataset with minimal a priori assumptions. The ANN analysis revealed temperature variables as primary climate drivers of NEP and daytime ET, when all seasons are considered, consistent with the assembly of past studies. New relations uncovered by the ANN approach include the role of soil moisture in driving daytime NEP during the snowmelt period, the nonlinear response of NEP to temperature across seasons, and the low relevance of summer rainfall for NEP or ET at the same daytime/nighttime time step. These new results offer a more complete perspective of climate-ecosystem interactions at this site than traditional deductive analyses alone

    BioTIME 2.0: Expanding and Improving a Database of Biodiversity Time Series

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    Motivation Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R package (BioTIMEr) to facilitate use of the database. Main Types of Variables Included The database is composed of one main data table containing the abundance records and 11 metadata tables. The data are organised in a hierarchy of scales where 11,989,233 records are nested in 1,603,067 sample events, from 553,253 sampling locations, which are nested in 708 studies. A study is defined as a sampling methodology applied to an assemblage for a minimum of 2 years. Spatial Location and Grain Sampling locations in BioTIME are distributed across the planet, including marine, terrestrial and freshwater realms. Spatial grain size and extent vary across studies depending on sampling methodology. We recommend gridding of sampling locations into areas of consistent size. Time Period and Grain The earliest time series in BioTIME start in 1874, and the most recent records are from 2023. Temporal grain and duration vary across studies. We recommend doing sample-level rarefaction to ensure consistent sampling effort through time before calculating any diversity metric. Major Taxa and Level of Measurement The database includes any eukaryotic taxa, with a combined total of 56,400 taxa. Software Format csv and. SQL

    Application of ANN and ANFIS for Predicting the Ultimate Bearing Capacity of Eccentrically Loaded Rectangular Foundations

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    Extensive laboratory model tests were conducted on a rectangular embedded foundation resting over homogeneous sand bed and subjected to an eccentric load to determine the ultimate bearing capacity. Tests were conducted for foundations with width-to-length ratios (B/L) of zero (strip case), 0.333, 0.5, and 1. The depth of embedment varies from 0 to 1 B with an increment of 0.5 B; where B is the width of foundation and the eccentricity ratio (e/B) varies from 0 to 0.15 with an increment of 0.05. Based on the laboratory model test results, two different approaches are proposed to determine the ultimate bearing capacity. Firstly, a neural network model is developed to estimate the reduction factor. The reduction factor can be used to estimate the ultimate bearing capacity of an eccentrically loaded foundation from the ultimate bearing capacity of a centrally loaded foundation. A thorough sensitivity analysis was carried out to determine the important parameters affecting the reduction factor. Importance was given to the construction of neural interpretation diagram. Based on this diagram, whether direct or inverse relationships exist between the input and output parameters were determined. Secondly, an adaptive neuro-fuzzy interface system (ANFIS) is used to predict the ultimate bearing capacity. The neuro-fuzzy models combine the transparent, linguistic representation of a fuzzy system with learning ability of artificial neural networks (ANNs). The results from the ANN and ANFIS were compared with the laboratory model test results. It is clearly seen that the performance of the ANFIS model in our study is better than that of the ANN model
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