A new wake detection methodology to capture wind turbine wakes using adaptive mesh refinement and Large Eddy Simulation

peer reviewedThe development of turbulent vortical wakes released downstream of wind turbines is crucial as it presents many technological implications for wind farm design and exploitation. The numerical prediction of these wakes constitutes a challenging problem as they involve the shedding of fine vortical structures, their instabilities, and interactions with a turbulent ambient flow. A Large Eddy Simulation (LES) approach allows capturing such flow phenomena, which implies a suitable mesh. Adaptive Mesh Refinement (AMR) is used to refine the mesh in the wind turbine wake to limit the computational cost. A methodology is developed to define and capture the wake envelope adequately. Three main parts of this methodology can be identified: The wind turbine wake detection, the target cell size required and adaptation frequency. The target cell size needed to properly capture the wind turbine wake is investigated in previous work [1], while this paper focuses on wind turbine wake detection. A strategy based on a progress variable with a source term in the rotor region is used to capture the wake. This variable is transported by the flow and thus defines the wake envelope. AMR is used to refine the mesh within this region. To validate the method, a comparison between an adaptive mesh case and a reference mesh case has been performed on a single rotor and a two aligned rotor configuration. For both, the wind turbine wake tracking method is effective. The progress variable is transported correctly and leads to a well-defined wake area. The mesh is refined adequately within it. The physical comparison between cases showed similar results, while the performance comparison showed a computational cost reduction of 30% in the single turbine configuration and 50% in the two turbines configuration. Therefore, our methodology coupled with adaptive mesh refinement can adequately capture wind turbine wake, define an accurate wake envelope and decrease the computational cost for the same physical precision.7. Affordable and clean energ

Large Eddy Simulation of HAWT and VAWT performances in the vicinity of a building

peer reviewedThis work compares the performances of a Horizontal Axis Wind Turbine (HAWT) and a Vertical Axis Wind Turbine (VAWT) using Wall modeled Large Eddy Simulation (WMLES) coupled with an actuator line method. The wind turbines are located in the vicinity of a real size industrial building. Both wind turbines are sized to produce the same power at their respective optimum Tip Speed Ratio for a same incident wind speed. Two relevant incident wind directions (SW and SSW) are investigated, the influence of the building on the performance of the two wind turbines is also analysed. The results obtained show that the HAWT has a better overall performance compared to the VAWT. Overspeeds are observed for both directions analysed, due to the presence of the building which locally increases the flow velocity. However, these overspeeds remain low due to the low height of the building. The change of wind direction only slightly impacts the HAWT production, while the VAWT production remains insensitive. However, the presence of the building improves the global production of both wind turbines. Qualitatively, this change of wind direction induces a deviation in the wake of both turbines, which is greater for a SW direction.7. Affordable and clean energ

A new wake detection methodology to capture wind turbine wakes using adaptive mesh refinement and large eddy simulation

7. Affordable and clean energ

Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria

Marine picocyanobacteria of the genera Prochlorococcus and Synechococcus are the most abundant photosynthetic organisms on Earth, an ecological success thought to be linked to the differential partitioning of distinct ecotypes into specific ecological niches. However, the underlying processes that governed the diversification of these microorganisms and the appearance of niche-related phenotypic traits are just starting to be elucidated. Here, by comparing 81 genomes, including 34 new Synechococcus, we explored the evolutionary processes that shaped the genomic diversity of picocyanobacteria. Time-calibration of a core-protein tree showed that gene gain/loss occurred at an unexpectedly low rate between the different lineages, with for instance 5.6 genes gained per million years (My) for the major Synechococcus lineage (sub-cluster 5.1), among which only 0.71/My have been fixed in the long term. Gene content comparisons revealed a number of candidates involved in nutrient adaptation, a large proportion of which are located in genomic islands shared between either closely or more distantly related strains, as identified using an original network construction approach. Interestingly, strains representative of the different ecotypes co-occurring in phosphorus-depleted waters (Synechococcus clades III, WPC1, and sub-cluster 5.3) were shown to display different adaptation strategies to this limitation. In contrast, we found few genes potentially involved in adaptation to temperature when comparing cold and warm thermotypes. Indeed, comparison of core protein sequences highlighted variants specific to cold thermotypes, notably involved in carotenoid biosynthesis and the oxidative stress response, revealing that long-term adaptation to thermal niches relies on amino acid substitutions rather than on gene content variation. Altogether, this study not only deciphers the respective roles of gene gains/losses and sequence variation but also uncovers numerous gene candidates likely involved in niche partitioning of two key members of the marine phytoplankton

The 1/4/6x24 campaign to cure tuberculosis quickly

The “right of everyone to enjoy the benefits of scientific progress and its applications,” also known as the right to science, is enshrined in the Universal Declaration of Human Rights and international human rights law. People with and at risk of tuberculosis (TB) are eager to realize this right.http://www.nature.com/nm/hj2024Family MedicineSDG-16:Peace,justice and strong institution

Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies

The ever-increasing number of available microbial genomes and metagenomes provides new opportunities to investigate the links between niche partitioning and genome evolution in the ocean, especially for the abundant and ubiquitous marine picocyanobacteria Prochlorococcus and Synechococcus. Here, by combining metagenome analyses of the Tara Oceans dataset with comparative genomics, including phyletic patterns and genomic context of individual genes from 256 reference genomes, we show that picocyanobacterial communities thriving in different niches possess distinct gene repertoires. We also identify clusters of adjacent genes that display specific distribution patterns in the field (eCAGs) and are thus potentially involved in the same metabolic pathway and may have a key role in niche adaptation. Several eCAGs are likely involved in the uptake or incorporation of complex organic forms of nutrients, such as guanidine, cyanate, cyanide, pyrimidine, or phosphonates, which might be either directly used by cells, for example for the biosynthesis of proteins or DNA, or degraded to inorganic nitrogen and/or phosphorus forms. We also highlight the enrichment of eCAGs involved in polysaccharide capsule biosynthesis in Synechococcus populations thriving in both nitrogen- and phosphorus-depleted areas vs. low-iron (Fe) regions, suggesting that the complexes they encode may be too energy-consuming for picocyanobacteria thriving in the latter areas. In contrast, Prochlorococcus populations thriving in Fe-depleted areas specifically possess an alternative respiratory terminal oxidase, potentially involved in the reduction of Fe(III) to Fe(II). Altogether, this study provides insights into how phytoplankton communities populate oceanic ecosystems, which is relevant to understanding their capacity to respond to ongoing climate change

Cyanorak v2.1 : a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes

Cyanorak v2.1 (http://www.sb-roscoff.fr/cyanorak) is an information system dedicated to visualizing, comparing and curating the genomes of Prochlorococcus, Synechococcus and Cyanobium, the most abundant photosynthetic microorganisms on Earth. The database encompasses sequences from 97 genomes, covering most of the wide genetic diversity known so far within these groups, and which were split into 25,834 clusters of likely orthologous groups (CLOGs). The user interface gives access to genomic characteristics, accession numbers as well as an interactive map showing strain isolation sites. The main entry to the database is through search for a term (gene name, product, etc.), resulting in a list of CLOGs and individual genes. Each CLOG benefits from a rich functional annotation including EggNOG, EC/K numbers, GO terms, TIGR Roles, custom-designed Cyanorak Roles as well as several protein motif predictions. Cyanorak also displays a phyletic profile, indicating the genotype and pigment type for each CLOG, and a genome viewer (Jbrowse) to visualize additional data on each genome such as predicted operons, genomic islands or transcriptomic data, when available. This information system also includes a BLAST search tool, comparative genomic context as well as various data export options. Altogether, Cyanorak v2.1 constitutes an invaluable, scalable tool for comparative genomics of ecologically relevant marine microorganisms