Concurrent Acquisition of a Single Nucleotide Polymorphism in Diverse Influenza H5N1 Clade 2.2 Sub-clades

Highly pathogenic Influenza A H5N1 was first identified in Guangdong Province in 1996, followed by human cases in Hong Kong in 1997. The number of confirmed human cases now exceeds 300, and the associated Case Fatality Rate exceeds 60%. The genetic diversity of the serotype continues to increase. Four distinct clades or sub-clades have been linked to human cases. The gradual genetic changes identified in the sub-clades have been attributed to copy errors by viral encoded polymerases that lack an editing function, thereby resulting in antigenic drift. We report here the concurrent acquisition of the same polymorphism by multiple, genetically distinct, clade 2.2 sub-clades in Egypt, Russia, and Ghana. These changes are not easily explained by the current theory of “random mutation” through copy error, and are more easily explained by recombination with a common source. This conclusion is supported by additional polymorphisms shared by clade 2.2 isolates in Egypt and Germany

Independent Ion Migration in Suspensions of Strongly Interacting Charged Colloidal Spheres

We report on sytematic measurements of the low frequency conductivity in aequous supensions of highly charged colloidal spheres. System preparation in a closed tubing system results in precisely controlled number densities between 1E16/m3 and 1E19/m^3 (packing fractions between 1E-7 and 1E-2) and electrolyte concentrations between 1E-7 and 1E-3 mol/l. Due to long ranged Coulomb repulsion some of the systems show a pronounced fluid or crystalline order. Under deionized conditions we find s to depend linearily on the packing fraction with no detectable influence of the phase transitions. Further at constant packing fraction s increases sublinearily with increasing number of dissociable surface groups N. As a function of c the conductivity shows pronounced differences depending on the kind of electrolyte used. We propose a simple yet powerful model based on independent migration of all species present and additivity of the respective conductivity contributions. It takes account of small ion macro-ion interactions in terms of an effectivly transported charge. The model successfully describes our qualitatively complex experimental observations. It further facilitates quantitative estimates of conductivity over a wide range of particle and experimental parameters.Comment: 32 pages, 17 figures, 2 tables, Accepted by Physical Review

Aggregation of Single Nucleotide Polymorphisms in a Human H5N1 Clade 2.2 Hemagglutinin

The evolution of H5N1 has attracted significant interest 1-4 due to linkages with avian 5,6 and human infections 7,8. The basic tenets of influenza genetics 9 attribute genetic drift to replication errors caused by a polymerase complex that lacks a proof reading function. However, recent analysis 10 of swine influenza genes identifies regions copied with absolute fidelity for more than 25 years. In addition, polymorphism tracing of clade 2.2 H5N1 single nucleotide polymorphisms identify concurrent acquisition 11 of the same polymorphism onto multiple genetic backgrounds in widely dispersed geographical locations. Here we show the aggregation of regional clade 2.2 polymorphisms from Germany, Egypt, and sub-Sahara Africa onto a human Nigerian H5N1 hemagglutinin (HA), implicating recombination in the dispersal and aggregation of single nucleotide polymorphisms from closely related genomes

Design of an electrochemical micromachining machine

Electrochemical micromachining (μECM) is a non-conventional machining process based on the phenomenon of electrolysis. μECM became an attractive area of research due to the fact that this process does not create any defective layer after machining and that there is a growing demand for better surface integrity on different micro applications including microfluidics systems, stress-free drilled holes in automotive and aerospace manufacturing with complex shapes, etc. This work presents the design of a next generation μECM machine for the automotive, aerospace, medical and metrology sectors. It has three axes of motion (X, Y, Z) and a spindle allowing the tool-electrode to rotate during machining. The linear slides for each axis use air bearings with linear DC brushless motors and 2-nm resolution encoders for ultra precise motion. The control system is based on the Power PMAC motion controller from Delta Tau. The electrolyte tank is located at the rear of the machine and allows the electrolyte to be changed quickly. This machine features two process control algorithms: fuzzy logic control and adaptive feed rate. A self-developed pulse generator has been mounted and interfaced with the machine and a wire ECM grinding device has been added. The pulse generator has the possibility to reverse the pulse polarity for on-line tool fabrication.The research reported in this paper is supported by the European Commission within the project “Minimizing Defects in Micro-Manufacturing Applications (MIDEMMA)” (FP7-2011-NMPICT- FoF-285614)

Aggregation of Single Nucleotide Polymorphisms in a Human H5N1 Clade 2.2 Hemagglutinin

The rapid evolution of the H5N1 serotype of avian influenza has been explained by a mechanism involving the selection of single nucleotide polymorphisms generated by copy errors. The recent emergence of H5N1 Clade 2.2 in fifty countries, offered a unique opportunity to view the acquisition of new polymorphism in these evolving genomes. We analyzed the H5N1 hemagglutinin gene from a fatal human case from Nigeria in 2007. The newly emerged polymorphisms were present in diverse H5N1 isolates from the previous year. The aggregation of these polymorphisms from clade 2.2 sub-clades was not supported by recent random mutations, and was most easily explained by recombination between closely related sequences

The Effects of Cocaine on Different Redox Forms of Cysteine and Homocysteine, and on Labile, Reduced Sulfur in the Rat Plasma Following Active versus Passive Drug Injections

Received: 28 November 2012 / Revised: 19 April 2013 / Accepted: 6 May 2013 / Published online: 16 May 2013 The Author(s) 2013. This article is published with open access at Springerlink.comThe aim of the present studies was to evaluate cocaine-induced changes in the concentrations of different redox forms of cysteine (Cys) and homocysteine (Hcy), and products of anaerobic Cys metabolism, i.e., labile, reduced sulfur (LS) in the rat plasma. The above-mentioned parameters were determined after i.p. acute and subchronic cocaine treatment as well as following i.v. cocaine self-administration using the yoked procedure. Additionally, Cys, Hcy, and LS levels were measured during the 10-day extinction training in rats that underwent i.v. cocaine administration. Acute i.p. cocaine treatment increased the total and protein-bound Hcy contents, decreased LS, and did not change the concentrations of Cys fractions in the rat plasma. In turn, subchronic i.p. cocaine administration significantly increased free Hcy and lowered the total and protein-bound Cys concentrations while LS level was unchanged. Cocaine self-administration enhanced the total and protein-bound Hcy levels, decreased LS content, and did not affect the Cys fractions. On the other hand, yoked cocaine infusions did not alter the concentration of Hcy fractions while decreased the total and protein-bound Cys and LS content. This extinction training resulted in the lack of changes in the examined parameters in rats with a history of cocaine self-administration while in the yoked cocaine group an increase in the plasma free Cys fraction and LS was seen. Our results demonstrate for the first time that cocaine does evoke significant changes in homeostasis of thiol amino acids Cys and Hcy, and in some products of anaerobic Cys metabolism, which are dependent on the way of cocaine administration

PENGARUH LATIHAN KOORDINASI MATA TANGAN TERHADAP KETEPATAN PUKULAN FOREHAND DAN BACKHAND PESERTA EKSTRAKURIKULER TENIS MEJA DI MTsN PACITAN

Tujuan penelitian ini adalah untuk mengetahui pengaruh latihan koordinasi mata tangan terhadap ketepatan pukulan forehand dan backhand peserta ekstrakurikuler Tenis Meja di MTsN Pacitan. Penelitian ini merupakan penelitian eksperimen semu. Desain yang digunakan dalam penelitian ini dengan rancangan “One Group Pretest-Posttest Design.Pengambilan data menggunakan tes dengan Instrumen kemampuan ketepatan pukulanforehand drive dan backhand drive digunakan alat tanda meja/Table marking, (Tomoliyus2012). Subjek penelitian ini adalah peserta ekstrakurikuler Tenis Meja di MTsN Pacitansebanyak 10 anak. Teknik analisis data menggunakan uji t dengan taraf signifikan 5 %. Hasilpenelitian analisis uji t pada pukulan forehand diperoleh nilai t hitung (5,403) t tabel (2,179),dan nilai p (0,000) dari 0,05, sedangkan analisisi uji t pada pukulan backhand diperolehnilai t hitung (7,492)   t tabel (2,179), dan nilai p (0,000) dari 0,05. Berdasarkan hasil tersebutmenunjukan jika nilai t hitung t tabel, dengan hasil tersebut dapat disimpulkan ada pengaruhlatihan koordinasi mata tangan terhadap ketepatan pukulan forehand dan backhand pesertaekstrakurikuler Tenis Meja di MTsN Pacitan.Kata kunci: Koordinasi Mata Tangan, Pukulan  Forehand, Pukulan Backhand, Tenis Mej

Fiber Beam Analysis of Reinforced Concrete Members with Cyclic Constitutive and Material Laws

This paper presents a non-linear Timoshenko beam element with axial, bending, and shear force interaction for nonlinear analysis of reinforced concrete structures. The structural material tangent stiffness matrix, which relates the increments of load to corresponding increments of displacement, is properly formulated. Appropriate simplified cyclic uniaxial constitutive laws are developed for cracked concrete in compression and tension. The model also includes the softening effect of the concrete due to lateral tensile strain. To establish the validity of the proposed model, correlation studies with experimentally-tested concrete specimens have been conducted

Influence of Fiber-Reinforced Polymer Sheets on the Constitutive Relationships of Reinforced Concrete Elements

Fiber-reinforced polymer (FRP) started to find its way as an economical alternative material in civil engineering in the early 1970s. The behavior and failure modes for FRP composite structures were studied through extensive experimental and analytical investigations. Although research related to the flexural behavior of FRP-strengthened elements has reached a mature phase, studies related to FRP shear strengthening are less advanced. In all proposed models to predict shear capacity, the constitutive behaviors of concrete and FRP are described independently. The true behavior, however, should account for the high level of interaction between the two materials. Constitutive relations for FRP-strengthened reinforced concrete (RC) elements should provide a better understanding of the shear behavior of the composite structure. To generate these relations, large-scale tests of a series of FRP-strengthened RC panel elements subjected to pure shear were conducted. This paper presents the results of the test program and the calibration of the parameters of the constitutive model. These constitutive laws could easily be implemented in finite-element models to predict the behavior of externally bonded FRP-strengthened beams. The focus in this work is on elements failing because of concrete crushing and not because of FRP debonding. The newly developed model provides a good level of accuracy when compared with experimental results