Genomics, environment and balancing selection in behaviorally bimodal populations : the caribou case

Selection forces that favor different phenotypes in different environments can change frequencies of genes between populations along environmental clines. Clines are also compatible with balancing forces, such as negative frequency‐dependent selection (NFDS), which maintains phenotypic polymorphisms within populations. For example, NFDS is hypothesized to maintain partial migration, a dimorphic behavioral trait prominent in species where only a fraction of the population seasonally migrates. Overall, NFDS is believed to be a common phenomenon in nature, yet, a scarcity of studies were published linking naturally occurring allelic variation with bimodal or multimodal phenotypes and balancing selection. We applied a Pool‐seq approach and detected selection on alleles associated with environmental variables along a North‐South gradient in western North American caribou, a species displaying partially migratory behavior. On 51 loci, we found a signature of balancing selection, which could be related to NFDS and ultimately the maintenance of the phenotypic polymorphisms known within these populations. Yet, remarkably, we detected directional selection on a locus when our sample was divided in two behaviorally distinctive groups regardless of geographic provenance (a subset of GPS‐collared migratory or sedentary individuals), indicating that, within populations, phenotypically homogeneous groups were genetically distinctive. Loci under selection were linked to functional genes involved in oxidative stress response, body development and taste perception. Overall, results indicated genetic differentiation along an environmental gradient of caribou populations, which we found characterized by genes potentially undergoing balancing selection. We suggest that the underlining balancing force, NFDS plays a strong role within populations harboring multiple haplotypes and phenotypes, as it is the norm in animals, plants and humans too

The search behavior of terrestrial mammals

Animals moving through landscapes need to strike a balance between finding sufficient resources to grow and reproduce while minimizing encounters with predators 1,2. Because encounter rates are determined by the average distance over which directed motion persists 1,3–5,this trade-off should be apparent in individuals’ movement. Using GPS data from 1,396individuals across 62 species of terrestrial mammals, we show how predators maintained directed motion ~7 times longer than for similarly-sized prey, revealing how prey species must trade off search efficiency against predator encounter rates. Individual search strategies were also modulated by resource abundance, with prey species forced to risk higher predator encounter rates when resources were scarce. These findings highlight the interplay between encounter rates and resource availability in shaping broad patterns mammalian movement strategies

Predator-mediated Allee effects in multi-prey systems

Allee effects can have significant consequences for small populations and understanding the causal mechanisms for such effects is important for guiding conservation actions. One proposed mechanism is through predation, in which a type II functional response leads to increasing predation rates as prey numbers decline. However, models to support this mechanism have incorporated only a single declining prey species in the functional response, which is probably an oversimplification. We reevaluated the potential for predator-mediated Allee effects in a multi-prey system using Holling's disc equation. We also used empirical data on a large herbivore to examine how grouping behavior may influence the potential for predation-mediated Allee effects. Results based on a multi-prey expression of the functional response predict that Allee effects caused by predation on relatively rare secondary prey may not occur because handling time of the abundant prey dominates the functional response such that secondary prey are largely "bycatch." However, a predator-mediated Allee effect can occur if secondary prey live in groups and if, as the population declines, their average group size declines (a relationship seen in several species). In such a case, the rate at which the number of groups declines is less than the rate at which the population declines. Thus the rate at which a predator encounters a group remains relatively stable, but when a predator kills one animal from smaller groups, the predation rate increases. These results highlight the need to evaluate risks associated with potential changes in group size as populations decline. © 2010 by the Ecological society ot America.</jats:p

Changes in landscape composition influence the decline of a threatened woodland caribou population

Large-scale habitat loss is frequently identified with loss of biodiversity, but examples of the direct effect of habitat alterations on changes in vital rates remain rare. Quantifying and understanding the relationship between habitat composition and changes in vital rates, however, is essential for the development of effective conservation strategies. It has been suggested that the decline of woodland caribou Rangifer tarandus caribou populations in North America is precipitated by timber harvesting that creates landscapes of early seral forests. Such habitat changes have altered the predator-prey system resulting in asymmetric predation, where predators are maintained by alternative prey (i.e. apparent competition). However, a direct link between habitat condition and caribou population declines has not been documented. We estimated survival probabilities for the threatened arboreal lichen-feeding ecotype of woodland caribou in British Columbia, Canada, at two different spatial scales. At the broader scale, observed variation in adult female survival rates among 10 distinct populations (range = 0.67-0.93) was best explained by variation in the amount of early seral stands within population ranges and population density. At the finer scale, home ranges of caribou killed by predators had lower proportions of old forest and more mid-aged forest as compared with multi-annual home ranges where caribou were alive. These results are consistent with predictions from the apparent competition hypothesis and quantify direct fitness consequences for caribou following habitat alterations. We conclude that apparent competition can cause rapid population declines and even extinction where changes in species composition occur following large scale habitat change. © 2007 The Authors. Journal compilation © 2007 British Ecological Society.</jats:p

Changes in landscape composition influence the decline of a threatened woodland caribou population

Large-scale habitat loss is frequently identified with loss of biodiversity, but examples of the direct effect of habitat alterations on changes in vital rates remain rare. Quantifying and understanding the relationship between habitat composition and changes in vital rates, however, is essential for the development of effective conservation strategies. It has been suggested that the decline of woodland caribou Rangifer tarandus caribou populations in North America is precipitated by timber harvesting that creates landscapes of early seral forests. Such habitat changes have altered the predator-prey system resulting in asymmetric predation, where predators are maintained by alternative prey (i.e. apparent competition). However, a direct link between habitat condition and caribou population declines has not been documented. We estimated survival probabilities for the threatened arboreal lichen-feeding ecotype of woodland caribou in British Columbia, Canada, at two different spatial scales. At the broader scale, observed variation in adult female survival rates among 10 distinct populations (range = 0.67-0.93) was best explained by variation in the amount of early seral stands within population ranges and population density. At the finer scale, home ranges of caribou killed by predators had lower proportions of old forest and more mid-aged forest as compared with multi-annual home ranges where caribou were alive. These results are consistent with predictions from the apparent competition hypothesis and quantify direct fitness consequences for caribou following habitat alterations. We conclude that apparent competition can cause rapid population declines and even extinction where changes in species composition occur following large scale habitat change. © 2007 The Authors. Journal compilation © 2007 British Ecological Society.</jats:p

Predator-mediated Allee effects in multi-prey systems

Allee effects can have significant consequences for small populations and understanding the causal mechanisms for such effects is important for guiding conservation actions. One proposed mechanism is through predation, in which a type II functional response leads to increasing predation rates as prey numbers decline. However, models to support this mechanism have incorporated only a single declining prey species in the functional response, which is probably an oversimplification. We reevaluated the potential for predator-mediated Allee effects in a multi-prey system using Holling's disc equation. We also used empirical data on a large herbivore to examine how grouping behavior may influence the potential for predation-mediated Allee effects. Results based on a multi-prey expression of the functional response predict that Allee effects caused by predation on relatively rare secondary prey may not occur because handling time of the abundant prey dominates the functional response such that secondary prey are largely "bycatch." However, a predator-mediated Allee effect can occur if secondary prey live in groups and if, as the population declines, their average group size declines (a relationship seen in several species). In such a case, the rate at which the number of groups declines is less than the rate at which the population declines. Thus the rate at which a predator encounters a group remains relatively stable, but when a predator kills one animal from smaller groups, the predation rate increases. These results highlight the need to evaluate risks associated with potential changes in group size as populations decline. © 2010 by the Ecological society ot America.</jats:p

Using predator-prey theory to predict outcomes of a broad-scale test of apparent competition

© 2015 by The University of Chicago. 0003-0147/2015/18505-55371$15.00. All rights reserved. Apparent competition is an important process influencing many ecological communities. We used predator-prey theory to predict outcomes of ecosystem experiments aimed at mitigating apparent competition by reducing primary prey. Simulations predicted declines in secondary prey following reductions in primary prey because predators consumed more secondary prey until predator numbers responded to reduced prey densities. Losses were exacerbated by a higher carrying capacity of primary prey and a longer lag time of the predator’s numerical response, but a gradual reduction in primary prey was less detrimental to the secondary prey. We compared predictions against two field experiments where endangered woodland caribou (Rangifer tarandus caribou) were victims of apparent competition. First, when deer (Odocoileus sp.) declined suddenly following a severe winter, cougar (Puma concolor) declined with a 1– 2-year lag, yet in the interim more caribou were killed by cougars, and caribou populations declined by 40%. Second, when moose (Alces alces) were gradually reduced using a management experiment, wolf (Canis lupus) populations declined but did not shift consumption to caribou, and the largest caribou subpopulation stabilized. The observed contrasting outcomes of sudden versus gradual declines in primary prey supported theoretical predictions. Combining theory with field studies clarified how to manage communities to mitigate endangerment caused by apparent competition that affects many taxa.</jats:p