PhenDisco: phenotype discovery system for the database of genotypes and phenotypes.

The database of genotypes and phenotypes (dbGaP) developed by the National Center for Biotechnology Information (NCBI) is a resource that contains information on various genome-wide association studies (GWAS) and is currently available via NCBI's dbGaP Entrez interface. The database is an important resource, providing GWAS data that can be used for new exploratory research or cross-study validation by authorized users. However, finding studies relevant to a particular phenotype of interest is challenging, as phenotype information is presented in a non-standardized way. To address this issue, we developed PhenDisco (phenotype discoverer), a new information retrieval system for dbGaP. PhenDisco consists of two main components: (1) text processing tools that standardize phenotype variables and study metadata, and (2) information retrieval tools that support queries from users and return ranked results. In a preliminary comparison involving 18 search scenarios, PhenDisco showed promising performance for both unranked and ranked search comparisons with dbGaP's search engine Entrez. The system can be accessed at http://pfindr.net

Sintered Cr/Pt and Ni/Au ohmic contacts to B12P2

Citation: Frye, C. D., Kucheyev, S. O., Edgar, J. H., Voss, L. F., Conway, A. M., Shao, Q. H., & Nikolic, R. J. (2015). Sintered Cr/Pt and Ni/Au ohmic contacts to B12P2. Journal of Vacuum Science & Technology A, 33(3), 6. doi:10.1116/1.4917010Icosahedral boron phosphide (B12P2) is a wide-bandgap semiconductor possessing interesting properties such as high hardness, chemical inertness, and the reported ability to self-heal from irradiation by high energy electrons. Here, the authors developed Cr/Pt and Ni/Au ohmic contacts to epitaxially grown B12P2 for materials characterization and electronic device development. Cr/Pt contacts became ohmic after annealing at 700 degrees C for 30 s with a specific contact resistance of 2 x 10(-4) Omega cm(2), as measured by the linear transfer length method. Ni/Au contacts were ohmic prior to any annealing, and their minimum specific contact resistance was similar to l-4 x 10(-4) Omega cm(2) after annealing over the temperature range of 500-800 degrees C. Rutherford backscattering spectrometry revealed a strong reaction and intermixing between Cr/Pt and B12P2 at 700 degrees C and a reaction layer between Ni and B12P2 thinner than similar to 25 nm at 500 degrees C. (C) 2015 American Vacuum Society

Onion Variety Trial 2014

In 2012 we trialed 18 yellow storage onion varieties, three red onion varieties, and one sweet onion. The 2013 trial included 17 yellow storage onion varieties, 3 sweet yellow onion varieties, one sweet white variety, and 7 red onion varieties. The onion varieties were evaluated for yield, quality, storability, and suitability to plasticulture. All of the onions were started from seed in the greenhouse and transplanted into raised beds covered with plastic mulch. In 2012 transplanting took place on April 13 and beds were covered with conventional plastic mulch. In 2013 transplanting took place on April 30 and beds were covered with biodegradable BioTelo plastic mulch. In major production areas onions are direct-seeded into bare ground, however, this production system requires extensive use of herbicides and frequent hand weeding. The use of transplants and plastic mulch essentially eliminates weeding within the beds. Varieties differ in how reliably the bulbs form above the mulch, and bulbs that form partly or entirely below the mulch are at increased risk of thrips damage, bulb rot, and mis-shaped bulbs. Each 4-ft bed contained 3 rows of onions, with an in-row spacing of 4 inches. All fertilizers were incorporated during bed construction; water was provided by rainfall supplemented with overhead irrigation

Effect of Sulfur Amendments on Yield and Quality in Alliums

In conclusion, sulfur fertilization appears to offer little or no benefit for allium vegetables in Rhode Island. Variety differences were much greater than the fertility effects, and growers who are experiencing issues with yield and storage life are encouraged to consider switching to better varieties

Leek Variety Trials, 2012

Variety trial of leek varieties conducted at Kingston, RI, in 2012

Leek Variety Trial 2014

Megaton was an excellent performer for yield both years, with strong establishment and uniformly large leeks. DP-12-02 and Tadorna also did well both years; moderate yields are due to the smaller size of these leeks relative to Megaton. DP-12-02 is a very tall, thin, green leek that is well suited to bunching sales in late summer and early fall, but loses quality when harvested late. Tadorna and Autumn Giant were the most winter hardy, and were generally good performers except for a tendency to variable size and a high percentage of unmarketably small leeks. Rally was only tested in 2013 but shows real promise as a leek for fall harvest