Characterization of dynamical regimes and entanglement sudden death in a microcavity quantum - dot system

The relation between the dynamical regimes (weak and strong coupling) and entanglement for a dissipative quantum - dot microcavity system is studied. In the framework of a phenomenological temperature model an analysis in both, temporal (population dynamics) and frequency domain (photoluminescence) is carried out in order to identify the associated dynamical behavior. The Wigner function and concurrence are employed to quantify the entanglement in each regime. We find that sudden death of entanglement is a typical characteristic of the strong coupling regime.Comment: To appear in Journal of Physics: Condensed Matte

First-principles study of lithium-doped carbon clathrates under pressure

We present a theoretical study on the behavior under pressure of the two hypothetical C$_{46}$ and Li$_8$C$_{46}$ type-I carbon clathrates in order to bring new informations concerning their synthesis. Using \textit{ab initio} calculations, we have explored the energetic and structural properties under pressure of these two carbon based cage-like materials. These low-density meta-stable phases show large negative pressure transitions compared to diamond which represent a serious obstacle for their synthesis. However, we evidence that a minimum energy barrier can be reached close to 40 GPa, suggesting that the synthesis of the Li-clathrate under extreme conditions of pressure and temperature may be possible. Electronic band structure with related density of states behavior under pressure as well as the dependence of the active Raman modes with pressure are also examined

JSBML: a flexible Java library for working with SBML

The specifications of the Systems Biology Markup Language (SBML) define standards for storing and exchanging computer models of biological processes in text files. In order to perform model simulations, graphical visualizations and other software manipulations, an in-memory representation of SBML is required. We developed JSBML for this purpose. In contrast to prior implementations of SBML APIs, JSBML has been designed from the ground up for the Java™ programming language, and can therefore be used on all platforms supported by a Java Runtime Environment. This offers important benefits for Java users, including the ability to distribute software as Java Web Start applications. JSBML supports all SBML Levels and Versions through Level 3 Version 1, and we have strived to maintain the highest possible degree of compatibility with the popular library libSBML. JSBML also supports modules that can facilitate the development of plugins for end user applications, as well as ease migration from a libSBML-based backend

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

Background: Quantitative models of biochemical and cellular systems are used to answer a variety of questions in the biological sciences. The number of published quantitative models is growing steadily thanks to increasing interest in the use of models as well as the development of improved software systems and the availability of better, cheaper computer hardware. To maximise the benefits of this growing body of models, the field needs centralised model repositories that will encourage, facilitate and promote model dissemination and reuse. Ideally, the models stored in these repositories should be extensively tested and encoded in community-supported and standardised formats. In addition, the models and their components should be cross-referenced with other resources in order to allow their unambiguous identification. Description: BioModels Database http://www.ebi.ac.uk/biomodels/ is aimed at addressing exactly these needs. It is a freely-accessible online resource for storing, viewing, retrieving, and analysing published, peer-reviewed quantitative models of biochemical and cellular systems. The structure and behaviour of each simulation model distributed by BioModels Database are thoroughly checked; in addition, model elements are annotated with terms from controlled vocabularies as well as linked to relevant data resources. Models can be examined online or downloaded in various formats. Reaction network diagrams generated from the models are also available in several formats. BioModels Database also provides features such as online simulation and the extraction of components from large scale models into smaller submodels. Finally, the system provides a range of web services that external software systems can use to access up-to-date data from the database. Conclusions: BioModels Database has become a recognised reference resource for systems biology. It is being used by the community in a variety of ways; for example, it is used to benchmark different simulation systems, and to study the clustering of models based upon their annotations. Model deposition to the database today is advised by several publishers of scientific journals. The models in BioModels Database are freely distributed and reusable; the underlying software infrastructure is also available from SourceForge https://sourceforge.net/projects/biomodels/ under the GNU General Public License

Tectonics of the Dalrymple Trough and uplift of the Murray Ridge (NW Indian Ocean)

International audienceThe Dalrymple Trough is a 150-km-long, 30-km-wide basin located at the northern termination of the Owen Fracture Zone (OFZ), which is the present-day active India-Arabia plate boundary. The Dalrymple Trough is closely associated with the Murray Ridge, a complex of prominent bathymetric highs located on its eastern flank. Recent multibeam mapping of the connection between the Dalrymple Trough and the OFZ revealed a horsetail structure, which suggests a close relationship between geological histories of both structures. However, the 3-6 Ma age of initiation of the OFZ contrasts with the commonly accepted Early Miocene emplacement of the Dalrymple Trough. Recent seismic lines document a new tectonic history of the Dalrymple Trough, involving two major episodes of deformation along the India-Arabia plate boundary at ~ 8-10 Ma and ~ 1.9 ± 0.9 Ma. The 8-10 Ma episode is marked by a system of folds linked to the main uplift of the southern Murray Ridge and the first uplift of the northern Murray Ridge. This episode is related to a global plate reorganization event in the Late Miocene, well expressed by intraplate deformation in the Central Indian Ocean. The Dalrymple Trough opened at ~ 1.9 ± 0.9 Ma subsequently to the formation of a stepover at the India-Arabia plate boundary, coeval with the regional M-unconformity in the Oman abyssal plain, which marks a structural reorganization of the Makran accretionary wedge, and the last uplift of the northern Murray Ridge

Crystallization and preliminary X-ray diffraction analysis of levansucrase (LsdA) from Gluconacetobacter diazotrophicus SRT4

The endophytic bacterium Gluconacetobacter diazotrophicus SRT4 secretes a constitutively expressed levansucrase (LsdA; EC 2.4.1.10), which converts sucrose to fructo-oligosaccharides and levan. Fully active LsdA was purified to high homogeneity by non-denaturing reversed-phase HPLC and was crystallized at room temperature by the hanging-drop vapour-diffusion method using ammonium sulfate and ethanol as precipitants. The crystals are extremely sensitive, but native data have been collected to 2.5 A under cryogenic conditions using synchrotron radiation. LsdA crystals belong to the orthorhombic space group P22(1)2(1) or P2(1)2(1)2, with unit-cell parameters a = 53.80, b = 119.39, c = 215.10 A

Mass wasting processes along the Owen Ridge (Northwest Indian Ocean)

International audienceThe Owen Ridge is a prominent relief that runs parallel to the coast of Oman in the NW Indian Ocean and is closely linked to the Owen Fracture Zone, an 800-km- long active fault system that accommodates today the Arabia-India strike-slip motion. Several types of mass failures mobilizing the pelagic cover have been mapped in details along the ridge using multibeam bathymetry and sediment echosounder. Here we present a synthetic map of the different types of mass wasting features observed along the ridge and we further establish a morphometric analysis of submarine landslides. The spatial variation of failure morphology is strongly related to the topography of the basement. The highest volumes of multi-events generated slides are mobilized along the southern portion of the ridge. There, the estimated volume of evacuated material during a slide is up to 45 km3. Combining these new observations with re-interpreted ODP seismic lines (Leg 117) documents sporadic mass wasting events through time along the southern segment of the ridge since its uplift in the Early Miocene, with a typical recurrence rate of the order of 105-106 years. Although seismicity may still be the final triggering process, mass wasting frequency is mainly controlled by the slow pelagic sedimentation rates and hence, time needed to build up the 40-80 m thick pelagic cover required to return to a mechanically unstable pelagic cover

A low-mass planet candidate orbiting Proxima Centauri at a distance of 1.5 AU

Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).Our nearest neighbor, Proxima Centauri, hosts a temperate terrestrial planet. We detected in radial velocities evidence of a possible second planet with minimum mass m c sin i c = 5.8 ± 1.9 M ⊕ and orbital period P c = 5.21 - 0.22 + 0.26 years. The analysis of photometric data and spectro-scopic activity diagnostics does not explain the signal in terms of a stellar activity cycle, but follow-up is required in the coming years for confirming its planetary origin. We show that the existence of the planet can be ascertained, and its true mass can be determined with high accuracy, by combining Gaia astrometry and radial velocities. Proxima c could become a prime target for follow-up and characterization with next-generation direct imaging instrumentation due to the large maximum angular separation of ~1 arc second from the parent star. The candidate planet represents a challenge for the models of super-Earth formation and evolution.Peer reviewedFinal Published versio