Reduction of spurious velocity in finite difference lattice Boltzmann models for liquid - vapor systems

The origin of the spurious interface velocity in finite difference lattice Boltzmann models for liquid - vapor systems is related to the first order upwind scheme used to compute the space derivatives in the evolution equations. A correction force term is introduced to eliminate the spurious velocity. The correction term helps to recover sharp interfaces and sets the phase diagram close to the one derived using the Maxwell construction.Comment: 22 pages, 10 figures (submitted to International Journal of Modern Physics C- Physics and Computers

Systematic discovery of structural elements governing stability of mammalian messenger RNAs.

Decoding post-transcriptional regulatory programs in RNA is a critical step towards the larger goal of developing predictive dynamical models of cellular behaviour. Despite recent efforts, the vast landscape of RNA regulatory elements remains largely uncharacterized. A long-standing obstacle is the contribution of local RNA secondary structure to the definition of interaction partners in a variety of regulatory contexts, including--but not limited to--transcript stability, alternative splicing and localization. There are many documented instances where the presence of a structural regulatory element dictates alternative splicing patterns (for example, human cardiac troponin T) or affects other aspects of RNA biology. Thus, a full characterization of post-transcriptional regulatory programs requires capturing information provided by both local secondary structures and the underlying sequence. Here we present a computational framework based on context-free grammars and mutual information that systematically explores the immense space of small structural elements and reveals motifs that are significantly informative of genome-wide measurements of RNA behaviour. By applying this framework to genome-wide human mRNA stability data, we reveal eight highly significant elements with substantial structural information, for the strongest of which we show a major role in global mRNA regulation. Through biochemistry, mass spectrometry and in vivo binding studies, we identified human HNRPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1, also known as HNRNPA2B1) as the key regulator that binds this element and stabilizes a large number of its target genes. We created a global post-transcriptional regulatory map based on the identity of the discovered linear and structural cis-regulatory elements, their regulatory interactions and their target pathways. This approach could also be used to reveal the structural elements that modulate other aspects of RNA behaviour

Creep-Fatigue Crack Growth in Power Plant Components

In components operating at high temperature, the presence of defect, that may derive from manufacturing process or operating under critical conditions, could raise to creep-fatigue crack growth even at low loading conditions. Creep- fatigue experimental tests have been performed on P91 material, at 600 °C according to ASTM E2760-10 standard, with focus on the effects of the initial nominal stress intensity factor range, ranging between 16 and 22 MPa m 0.5, and the hold time, ranging between 0.1 and 10 hours. The results will be presented in the paper, together with their application for residual life prediction of a power plant cracked pipe, as case study

Lattice Boltzmann study on Kelvin-Helmholtz instability: the roles of velocity and density gradients

A two-dimensional lattice Boltzmann model with 19 discrete velocities for compressible Euler equations is proposed (D2V19-LBM). The fifth-order Weighted Essentially Non-Oscillatory (5th-WENO) finite difference scheme is employed to calculate the convection term of the lattice Boltzmann equation. The validity of the model is verified by comparing simulation results of the Sod shock tube with its corresponding analytical solutions. The velocity and density gradient effects on the Kelvin-Helmholtz instability (KHI) are investigated using the proposed model. Sharp density contours are obtained in our simulations. It is found that, the linear growth rate $\gamma$ for the KHI decreases with increasing the width of velocity transition layer ${D_{v}}$ but increases with increasing the width of density transition layer ${D_{\rho}}$. After the initial transient period and before the vortex has been well formed, the linear growth rates, $\gamma_v$ and $\gamma_{\rho}$, vary with ${D_{v}}$ and ${D_{\rho}}$ approximately in the following way, $\ln\gamma_{v}=a-bD_{v}$ and $\gamma_{\rho}=c+e\ln D_{\rho} ({D_{\rho}}<{D_{\rho}^{E}})$, where $a$, $b$, $c$ and $e$ are fitting parameters and ${D_{\rho}^{E}}$ is the effective interaction width of density transition layer. When ${D_{\rho}}>{D_{\rho}^{E}}$ the linear growth rate $\gamma_{\rho}$ does not vary significantly any more. One can use the hybrid effects of velocity and density transition layers to stabilize the KHI. Our numerical simulation results are in general agreement with the analytical results [L. F. Wang, \emph{et al.}, Phys. Plasma \textbf{17}, 042103 (2010)].Comment: Accepted for publication in PR

Evaluation of social personalized adaptive E-Learning environments : end-user point of view

The use of adaptations, along with the social affordances of collaboration and networking, carries a great potential for improving e-learning experiences. However, the review of the previous work indicates current e-learning systems have only marginally explored the integration of social features and adaptation techniques. The overall aim of this research, therefore, is to address this gap by evaluating a system developed to foster social personalized adaptive e-learning experiences. We have developed our first prototype system, Topolor, based on the concepts of Adaptive Educational Hypermedia and Social E-Learning. We have also conducted an experimental case study for the evaluation of the prototype system from different perspectives. The results show a considerably high satisfaction of the end users. This paper reports the evaluation results from end user point of view, and generalizes our method to a component-based evaluation framework

Predicting elections for multiple countries using Twitter and polls

The authors' work focuses on predicting the 2014 European Union elections in three different countries using Twitter and polls. Past works in this domain relying strictly on Twitter data have been proven ineffective. Others, using polls as their ground truth, have raised questions regarding the contribution of Twitter data for this task. Here, the authors treat this task as a multivariate time-series forecast, extracting Twitter- and poll-based features and training different predictive algorithms. They've achieved better results than several past works and the commercial baseline

Cyclin D-Cdk4,6 Drives Cell-Cycle Progression via the Retinoblastoma Protein's C-Terminal Helix.

The cyclin-dependent kinases Cdk4 and Cdk6 form complexes with D-type cyclins to drive cell proliferation. A well-known target of cyclin D-Cdk4,6 is the retinoblastoma protein Rb, which inhibits cell-cycle progression until its inactivation by phosphorylation. However, the role of Rb phosphorylation by cyclin D-Cdk4,6 in cell-cycle progression is unclear because Rb can be phosphorylated by other cyclin-Cdks, and cyclin D-Cdk4,6 has other targets involved in cell division. Here, we show that cyclin D-Cdk4,6 docks one side of an alpha-helix in the&nbsp;Rb C terminus, which is not recognized by cyclins E, A, and B. This helix-based docking mechanism is shared by the p107 and p130 Rb-family members across metazoans. Mutation of the Rb C-terminal helix prevents its phosphorylation, promotes G1 arrest, and enhances Rb's tumor suppressive function. Our work conclusively demonstrates that the cyclin D-Rb interaction drives cell division and expands the diversity of known cyclin-based protein docking mechanisms

Finite difference lattice Boltzmann model with flux limiters for liquid-vapor systems

In this paper we apply a finite difference lattice Boltzmann model to study the phase separation in a two-dimensional liquid-vapor system. Spurious numerical effects in macroscopic equations are discussed and an appropriate numerical scheme involving flux limiter techniques is proposed to minimize them and guarantee a better numerical stability at very low viscosity. The phase separation kinetics is investigated and we find evidence of two different growth regimes depending on the value of the fluid viscosity as well as on the liquid-vapor ratio.Comment: 10 pages, 10 figures, to be published in Phys. Rev.

Non-Linear Advanced Control of the LHC Inner Triplet Heat Exchanger Test Unit

The future Large Hadron Collider (LHC) at CERN will include eight interaction region final focus magnet systems, the so-called "Inner Triplet", one on each side of the four beam collision points. The Inner Triplets will be cooled in a static bath of pressurized He II nominally at 1.9 K. This temperature is a control parameter and has very severe constraints in order to avoid the transition from the superconducting to normal resistive state. The main difference in these special zones with respect to a regular LHC cell is higher dynamic heat load unevenly distributed which modifies largely the process characteristics and hence the controller performance. Several control strategies have already been tested at CERN in a pilot plant (LHC String Test) which reproduced a LHC half-cell. In order to validate a common control structure along the whole LHC ring, a Nonlinear Model Predictive Control (NMPC) has been developed and implemented in the Inner Triplet Heat Exchanger Unit (IT-HXTU) at CERN. Automation of the Inner Triplet setup and the advanced control techniques deployed based on the Model Based Predictive Control (MBPC) principle are presented