Narrow structure in the coherent population trapping resonances in rubidium and Rayleigh scattering

The measurement of the coherent-population-trapping (CPT) resonances in uncoated Rb vacuum cells has shown that the shape of the resonances is different in different cells. In some cells the resonance has a complex shape - a narrow Lorentzian structure, which is not power broadened, superimposed on the power broadened CPT resonance. The results of the performed investigations on the fluorescence angular distribution are in agreement with the assumption that the narrow structure is a result of atom interaction with Rayleigh scattering light. The results are interesting for indication of the vacuum cleanness of the cells and building of magnetooptical sensors

Transformation of electromagnetically induced transparency into absorption in a thermal potassium optical cell with spin preserving coating

We report a new experimental approach where an order of magnitude enhancement of the electromagnetically induced absorption (EIA) resonance contrast, thus making it similar to that of the EIT resonance contrast is observed under the same conditions. The EIA signal results from the interaction of a weak probe beam with a ground state that has been driven by the pump (counter-propagating) beam. Probe absorption spectra are presented where the laser frequency is slowly detuned over the D 1 line of 39 K vapor contained in a cell with a PDMS antirelaxation coating. In addition to the frequency detuning, a magnetic field orthogonal to the laser beams is scanned around zero value at a higher rate. With both laser beams linearly polarized, an EIT resonance is observed. However, changing the pump beam polarization from linear to circular reverses the resonance signal from EIT to EIA

Optical characterization of antirelaxation coatings

Antirelaxation coatings (ARC) are used in optical cells containing alkali metal vapor to reduce the depolarization of alkali atoms after collisions with the cell walls. The long-lived ground state polarization is a basis for development of atomic clocks, magnetometers, quantum memory, slow light experiments, precision measurements of fundamental symmetries etc. In this work, a simple method for measuring the number of collisions of the alkali atoms with the cell walls without atomic spin randomization (Nasyrov et al., Proc. SPIE (2015)) was applied to characterize the AR properties of two PDMS coatings prepared from different solutions in ether (PDMS 2% and PDMS 5%). We observed influence of the light-induced atomic desorption (LIAD) on the AR properties of coatings

Pervasive Sharing of Genetic Effects in Autoimmune Disease

Genome-wide association (GWA) studies have identified numerous, replicable, genetic associations between common single nucleotide polymorphisms (SNPs) and risk of common autoimmune and inflammatory (immune-mediated) diseases, some of which are shared between two diseases. Along with epidemiological and clinical evidence, this suggests that some genetic risk factors may be shared across diseases—as is the case with alleles in the Major Histocompatibility Locus. In this work we evaluate the extent of this sharing for 107 immune disease-risk SNPs in seven diseases: celiac disease, Crohn's disease, multiple sclerosis, psoriasis, rheumatoid arthritis, systemic lupus erythematosus, and type 1 diabetes. We have developed a novel statistic for Cross Phenotype Meta-Analysis (CPMA) which detects association of a SNP to multiple, but not necessarily all, phenotypes. With it, we find evidence that 47/107 (44%) immune-mediated disease risk SNPs are associated to multiple—but not all—immune-mediated diseases (SNP-wise PCPMA<0.01). We also show that distinct groups of interacting proteins are encoded near SNPs which predispose to the same subsets of diseases; we propose these as the mechanistic basis of shared disease risk. We are thus able to leverage genetic data across diseases to construct biological hypotheses about the underlying mechanism of pathogenesis

Spin randomization of light-induced desorbed Rb atoms

We present the first experimental observation of atomic spin randomization of Rb atoms released by light-induced atomic desorption (LIAD). A natural mixture of Rb atoms contained in paraffin and PDMS coated glass cells is irradiated by a free-running diode laser light tuned to the Rb D2 resonance line. The transmission spectrum of the Rb vapor is thus modified and shows a strong enhancement of the hyperfine optical pumping as the light intensity is increased and the laser-frequency scanning rate is decreased. The D2 line spectra are compared for two cases: without and with illumination of the walls of the cell by a UV lamp centered around the wavelength of 404 nm. A simple theoretical model based on the solution of the rate balance equations is introduced in order to analyze the experimental results

Excitation transfer between the rubidium 5 2 D fine-structure levels in collisions with ground-state rubidium atoms: Experiment and theory

We report a study of fine-structure mixing Rb(5 2 D 5/2 )→Rb(5 2 D 3/2 ) in collisions with ground-state Rb atoms. In the experiment, two-photon cw laser excitation was applied to the Rb vapor cell. The measured cross section for the process was (5.8Ϯ1.9)ϫ10 Ϫ14 cm 2 . Theoretical calculations using nonadiabatic collision theory gave a value of 3.4ϫ10 Ϫ14 cm 2

A candidate gene study of the type I interferon pathway implicates IKBKE and IL8 as risk loci for SLE

Systemic Lupus Erythematosus (SLE) is a systemic autoimmune disease in which the type I interferon pathway has a crucial role. We have previously shown that three genes in this pathway, IRF5, TYK2 and STAT4, are strongly associated with risk for SLE. Here, we investigated 78 genes involved in the type I interferon pathway to identify additional SLE susceptibility loci. First, we genotyped 896 single-nucleotide polymorphisms in these 78 genes and 14 other candidate genes in 482 Swedish SLE patients and 536 controls. Genes with P<0.01 in the initial screen were then followed up in 344 additional Swedish patients and 1299 controls. SNPs in the IKBKE, TANK, STAT1, IL8 and TRAF6 genes gave nominal signals of association with SLE in this extended Swedish cohort. To replicate these findings we extracted data from a genomewide association study on SLE performed in a US cohort. Combined analysis of the Swedish and US data, comprising a total of 2136 cases and 9694 controls, implicates IKBKE and IL8 as SLE susceptibility loci (Pmeta=0.00010 and Pmeta=0.00040, respectively). STAT1 was also associated with SLE in this cohort (Pmeta=3.3 × 10−5), but this association signal appears to be dependent of that previously reported for the neighbouring STAT4 gene. Our study suggests additional genes from the type I interferon system in SLE, and highlights genes in this pathway for further functional analysis

A Genetic Risk Score Combining Ten Psoriasis Risk Loci Improves Disease Prediction

Psoriasis is a chronic, immune-mediated skin disease affecting 2–3% of Caucasians. Recent genetic association studies have identified multiple psoriasis risk loci; however, most of these loci contribute only modestly to disease risk. In this study, we investigated whether a genetic risk score (GRS) combining multiple loci could improve psoriasis prediction. Two approaches were used: a simple risk alleles count (cGRS) and a weighted (wGRS) approach. Ten psoriasis risk SNPs were genotyped in 2815 case-control samples and 858 family samples. We found that the total number of risk alleles in the cases was significantly higher than in controls, mean 13.16 (SD 1.7) versus 12.09 (SD 1.8), p = 4.577×10−40. The wGRS captured considerably more risk than any SNP considered alone, with a psoriasis OR for high-low wGRS quartiles of 10.55 (95% CI 7.63–14.57), p = 2.010×10−65. To compare the discriminatory ability of the GRS models, receiver operating characteristic curves were used to calculate the area under the curve (AUC). The AUC for wGRS was significantly greater than for cGRS (72.0% versus 66.5%, p = 2.13×10−8). Additionally, the AUC for HLA-C alone (rs10484554) was equivalent to the AUC for all nine other risk loci combined (66.2% versus 63.8%, p = 0.18), highlighting the dominance of HLA-C as a risk locus. Logistic regression revealed that the wGRS was significantly associated with two subphenotypes of psoriasis, age of onset (p = 4.91×10−6) and family history (p = 0.020). Using a liability threshold model, we estimated that the 10 risk loci account for only11.6% of the genetic variance in psoriasis. In summary, we found that a GRS combining 10 psoriasis risk loci captured significantly more risk than any individual SNP and was associated with early onset of disease and a positive family history. Notably, only a small fraction of psoriasis heritability is captured by the common risk variants identified to date