Cosmic Pathways for Compact Groups in the Milli-Millennium Simulation

We detected 10 compact galaxy groups (CGs) at $z=0$ in the semi-analytic galaxy catalog of Guo et al. (2011) for the milli-Millennium Cosmological Simulation (sCGs in mGuo2010a). We aimed to identify potential canonical pathways for compact group evolution and thus illuminate the history of observed nearby compact groups. By constructing merger trees for $z=0$ sCG galaxies, we studied the cosmological evolution of key properties, and compared them with $z=0$ Hickson CGs (HCGs). We found that, once sCG galaxies come within 1 (0.5) Mpc of their most massive galaxy, they remain within that distance until $z=0$, suggesting sCG "birth redshifts". At $z=0$ stellar masses of sCG most-massive galaxies are within $10^{10} \lesssim M_{\ast}/M_{\odot} \lesssim 10^{11}$. In several cases, especially in the two 4- and 5-member systems, the amount of cold gas mass anti-correlates with stellar mass, which in turn correlates with hot gas mass. We define the angular difference between group members' 3D velocity vectors, $\Delta\theta_{\rm vel}$, and note that many of the groups are long-lived because their small values of $\Delta\theta_{\rm vel}$ indicate a significant parallel component. For triplets in particular, $\Delta\theta_{\rm vel}$ values range between $20^{\circ}$ and $40^{\circ}$ so that galaxies are coming together along roughly parallel paths, and pairwise separations do not show large pronounced changes after close encounters. The best agreement between sCG and HCG physical properties is for $M_{\ast}$ galaxy values, but HCG values are higher overall, including for SFRs. Unlike HCGs, due to a tail at low SFR and $M_{\ast}$, and a lack of $M_{\ast}\gtrsim 10^{11}M_{\odot}$ galaxies, only a few sCG galaxies are on the star-forming main sequence.Comment: Style fixes to better match ApJ published version. Uses likeapj1.1 style files: 17 pages, 13 figures, 2 tables. LaTex style files available at https://github.com/qtast/likeapj/releases/lates

Supersonic boundary-layer transition on the LaRC F-106 and the DFRF F-15 aircraft. Part 1: Transition measurements and stability analysis

For the case of the F-15 flight tests, boundary layer transition was observed up to Mach numbers of 1.2. For very limited and specific flight conditions, laminar flow existed back to about 20 percent chord on the surface clean up glove. Hot film instrumentation was effective for locating the region of transition. For the F-106 flight tests, transition on the wing or vertical tail generally occurred very near the attachment line. Transition was believed to be caused by either attachment line contamination or strong cross flow development due to the high sweep angles of the test articles. The compressibility analysis showed that cross flow N-factors were in the range of 5 to 12 at transition

Pan-squamous genomic profiling stratified by anatomic tumor site and viral association

Background: Squamous cell carcinomas (SCC) have diverse anatomic etiologies but may share common genomic biomarkers. We profiled 7,871 unique SCCs across nine anatomic sites to investigate commonality in genomic alterations (GA), tumor mutational burden (TMB), human papillomavirus (HPV) association, and mutational signatures. Methods: Tissue from over 8,100 unique SCC samples originating from nine anatomic sites (anogenital (anus, cervix, penis, vagina, vulva), esophagus, head and neck, lung, and skin) were sequenced by hybrid capture-based comprehensive genomic profiling to evaluate GA and TMB. About 3% of non-cutaneous SCC samples had UV signatures, indicative of potential primary site misdiagnoses, and were filtered from the analysis. Detection of HPV, including high-risk strains 16, 18, 31, 33, and 45, was implemented through de novo assembly of non-human sequencing reads and BLASTn comparison against all viral nucleotide sequences in the NCBI database. Results: The proportion of HPV+ patients by anatomic site varied, with the highest being anal (91%) and cervical (83%). The mutational landscape of each cohort was similar, regardless of anatomic origin, but clustered based on HPV status. The largest differences in GA frequency as stratified by HPV- vs. HPV+ were TP53 (87% vs. 12%), CDKN2A (45% vs. 6%), and PIK3CA (22% vs. 33%). The median TMB in cases originating from HPV-associated sites was similar, regardless of HPV status. Higher median TMB was observed in lung and skin cases, which exhibited significant enrichment of mutational signatures indicative of tobacco- and UV-induced DNA damage, respectively. Conclusions: HPV+ and HPV- SCC populations have distinct genomic profiles and, for the latter, anatomic site is correlated with TMB distribution, secondary to associated carcinogen exposure. As such, biomarkers such as TMB and UV signature can provide unexpected insight into site of origin misdiagnoses and may correlate with benefit from immune checkpoint inhibitors

Human immunodeficiency virus rebound after suppression to < 400 copies/mL during initial highly active antiretroviral therapy regimens, according to prior nucleoside experience and duration of suppression

This study evaluated 1433 human immunodeficiency virus (HIV)-infected patients starting highly active antiretroviral therapy (HAART), 409 (28%) of whom had prior nucleoside experience and achieved an HIV load of <400 copies/mL by 24 weeks of therapy. Three hundred seven patients experienced virus rebound during a total of 2773.3 person-years of follow-up. There was a higher rate of virus rebound among the patients with pre-HAART nucleoside experience (relative hazard [RH], 2.86; 95% confidence interval, 2.22-3.84; P < .0001) and a decreasing rate of virus rebound with increasing duration of virus suppression (i.e., time since achieving a virus load of <400 HIV RNA copies/mL) among both the nucleoside-experienced and naive patients (P < .0001), but the difference between the groups persisted into the third year of follow-up (P = .0007). Even patients who had experienced <2 months of nucleoside therapy before beginning HAART had an increased risk of virus rebound (RH, 1.95; P = .009). It appears that only a small period of pre-HAART nucleoside therapy is sufficient to confer a disadvantage, in terms of risk of virus rebound, that persists for several years

The structure of the infinite models in integer programming

The infinite models in integer programming can be described as the convex hull of some points or as the intersection of halfspaces derived from valid functions. In this paper we study the relationships between these two descriptions. Our results have implications for corner polyhedra. One consequence is that nonnegative, continuous valid functions suffice to describe corner polyhedra (with or without rational data)

Efficient, designable, and broad-bandwidth optical extinction via aspect-ratio-tailored silver nanodisks

Subwavelength resonators, ranging from single atoms to metallic nanoparticles, typically exhibit a narrow-bandwidth response to optical excitations. We computationally design and experimentally synthesize tailored distributions of silver nanodisks to extinguish light over broad and varied frequency windows. We show that metallic nanodisks are two-to-ten-times more efficient in absorbing and scattering light than common structures, and can approach fundamental limits to broadband scattering for subwavelength particles. We measure broadband extinction per volume that closely approaches theoretical predictions over three representative visible-range wavelength windows, confirming the high efficiency of nanodisks and demonstrating the collective power of computational design and experimental precision for developing new photonics technologies

Characterizing the Cool KOIs II. The M Dwarf KOI-254 and its Hot Jupiter

We report the confirmation and characterization of a transiting gas giant planet orbiting the M dwarf KOI-254 every 2.455239 days, which was originally discovered by the Kepler mission. We use radial velocity measurements, adaptive optics imaging and near infrared spectroscopy to confirm the planetary nature of the transit events. KOI-254b is the first hot Jupiter discovered around an M-type dwarf star. We also present a new model-independent method of using broadband photometry to estimate the mass and metallicity of an M dwarf without relying on a direct distance measurement. Included in this methodology is a new photometric metallicity calibration based on J-K colors. We use this technique to measure the physical properties of KOI-254 and its planet. We measure a planet mass of Mp = 0.505 Mjup, radius Rp = 0.96 Rjup and semimajor axis a = 0.03 AU, based on our measured stellar mass Mstar = 0.59 Msun and radius Rstar = 0.55 Rsun. We also find that the host star is metal-rich, which is consistent with the sample of M-type stars known to harbor giant planets.Comment: AJ accepted (in press

Thin liquid water clouds: their importance and our challenge

Many clouds important to the Earth’s energy balance contain small amounts of liquid water, yet despite many improvements, large differences in retrievals of their liquid water amount and particle size still must be resolved