Stability, Structure and Scale: Improvements in Multi-modal Vessel Extraction for SEEG Trajectory Planning

Purpose Brain vessels are among the most critical landmarks that need to be assessed for mitigating surgical risks in stereo-electroencephalography (SEEG) implantation. Intracranial haemorrhage is the most common complication associated with implantation, carrying signi cant associated morbidity. SEEG planning is done pre-operatively to identify avascular trajectories for the electrodes. In current practice, neurosurgeons have no assistance in the planning of electrode trajectories. There is great interest in developing computer assisted planning systems that can optimise the safety pro le of electrode trajectories, maximising the distance to critical structures. This paper presents a method that integrates the concepts of scale, neighbourhood structure and feature stability with the aim of improving robustness and accuracy of vessel extraction within a SEEG planning system. Methods The developed method accounts for scale and vicinity of a voxel by formulating the problem within a multi-scale tensor voting framework. Feature stability is achieved through a similarity measure that evaluates the multi-modal consistency in vesselness responses. The proposed measurement allows the combination of multiple images modalities into a single image that is used within the planning system to visualise critical vessels. Results Twelve paired datasets from two image modalities available within the planning system were used for evaluation. The mean Dice similarity coe cient was 0.89 ± 0.04, representing a statistically signi cantly improvement when compared to a semi-automated single human rater, single-modality segmentation protocol used in clinical practice (0.80 ±0.03). Conclusions Multi-modal vessel extraction is superior to semi-automated single-modality segmentation, indicating the possibility of safer SEEG planning, with reduced patient morbidity

Development of a fretting-fatigue mapping concept: The effect of material properties and surface treatments

Fretting-fatigue induced by combined localized cyclic contact motion and external bulk fatigue loadings may result in premature and dramatic failure of the contacting components. Depending on fretting and fatigue loading conditions, crack nucleation and possibly crack propagation can be activated. This paper proposes a procedure for estimating these two damage thresholds. The crack nucleation boundary is formalized by applying the Crossland high cycle fatigue criterion, taking into account the stress gradient and the ensuing #size##effect#. The prediction of the crack propagation condition is formalized using a short crack arrest description. Applied to an AISI 1034 steel, this methodology allows the development of an original material response fretting-fatigue map (FFM). The impact of material properties and surface treatments is investigated

Behaviour of shot peening combined with WC-Co HVOF coating under complex fretting wear and fretting fatigue loading conditions

This study investigated the fretting and fretting fatigue performance of tungsten carbide–cobalt (WC–Co) HVOF spray coating systems. Fretting wear and fretting fatigue tests of specimens with shot peening and WC–Co coatings on 30NiCrMo substrates were conducted. The WC-Co coating presents very good wear resistance and decreases by more than 9 times the energy wear coefficient (α) under fretting conditions. The tested coating reduces crack nucleation under both fretting and fretting fatigue studied situations. Finally the crack arrest conditions are evaluated by the combined fretting and fretting fatigue investigation. It is shown and explained how and why this combined surface treatment (shot peening and WC–Co) presents a very good compromise against wear and cracking fretting damage

The evolution of interdisciplinarity in physics research

Science, being a social enterprise, is subject to fragmentation into groups that focus on specialized areas or topics. Often new advances occur through cross-fertilization of ideas between sub-fields that otherwise have little overlap as they study dissimilar phenomena using different techniques. Thus to explore the nature and dynamics of scientific progress one needs to consider the large-scale organization and interactions between different subject areas. Here, we study the relationships between the sub-fields of Physics using the Physics and Astronomy Classification Scheme (PACS) codes employed for self-categorization of articles published over the past 25 years (1985-2009). We observe a clear trend towards increasing interactions between the different sub-fields. The network of sub-fields also exhibits core-periphery organization, the nucleus being dominated by Condensed Matter and General Physics. However, over time Interdisciplinary Physics is steadily increasing its share in the network core, reflecting a shift in the overall trend of Physics research.Comment: Published version, 10 pages, 8 figures + Supplementary Informatio

cyTRON and cyTRON/JS: two Cytoscape-based applications for the inference of cancer evolution models

The increasing availability of sequencing data of cancer samples is fueling the development of algorithmic strategies to investigate tumor heterogeneity and infer reliable models of cancer evolution. We here build up on previous works on cancer progression inference from genomic alteration data, to deliver two distinct Cytoscape-based applications, which allow to produce, visualize and manipulate cancer evolution models, also by interacting with public genomic and proteomics databases. In particular, we here introduce cyTRON, a stand-alone Cytoscape app, and cyTRON/JS, a web application which employs the functionalities of Cytoscape/JS. cyTRON was developed in Java; the code is available at https://github.com/BIMIB-DISCo/cyTRON and on the Cytoscape App Store http://apps.cytoscape.org/apps/cytron. cyTRON/JS was developed in JavaScript and R; the source code of the tool is available at https://github.com/BIMIB-DISCo/cyTRON-js and the tool is accessible from https://bimib.disco.unimib.it/cytronjs/welcome

Navigability is a Robust Property

The Small World phenomenon has inspired researchers across a number of fields. A breakthrough in its understanding was made by Kleinberg who introduced Rank Based Augmentation (RBA): add to each vertex independently an arc to a random destination selected from a carefully crafted probability distribution. Kleinberg proved that RBA makes many networks navigable, i.e., it allows greedy routing to successfully deliver messages between any two vertices in a polylogarithmic number of steps. We prove that navigability is an inherent property of many random networks, arising without coordination, or even independence assumptions

A Doppler-Cancellation Technique for Determining the Altitude Dependence of Gravitational Red Shift in an Earth Satellite

A cancellation technique permits measurement of the frequency of a source moving relative to an observer without the obscuring effect of first-order Doppler shifts. The application of this method to a gravitational red shift experiment involving the use of an earth satellite containing a highly stable oscillator is described. The rapidity with which a measurement can be made permits the taking of data at various altitudes in a given elliptical orbit. Tropospheric and ionospheric effects upon the accuracy of results are estimated

Realistic searches on stretched exponential networks

We consider navigation or search schemes on networks which have a degree distribution of the form $P(k) \propto \exp(-k^\gamma)$. In addition, the linking probability is taken to be dependent on social distances and is governed by a parameter $\lambda$. The searches are realistic in the sense that not all search chains can be completed. An estimate of $\mu=\rho/s_d$, where $\rho$ is the success rate and $s_d$ the dynamic path length, shows that for a network of $N$ nodes, $\mu \propto N^{-\delta}$ in general. Dynamic small world effect, i.e., $\delta \simeq 0$ is shown to exist in a restricted region of the $\lambda-\gamma$ plane.Comment: Based on talk given in Statphys Guwahati, 200

A reaction-diffusion model for the growth of avascular tumor

A nutrient-limited model for avascular cancer growth including cell proliferation, motility and death is presented. The model qualitatively reproduces commonly observed morphologies for primary tumors, and the simulated patterns are characterized by its gyration radius, total number of cancer cells, and number of cells on tumor periphery. These very distinct morphological patterns follow Gompertz growth curves, but exhibit different scaling laws for their surfaces. Also, the simulated tumors incorporate a spatial structure composed of a central necrotic core, an inner rim of quiescent cells and a narrow outer shell of proliferating cells in agreement with biological data. Finally, our results indicate that the competition for nutrients among normal and cancer cells may be a determinant factor in generating papillary tumor morphology.Comment: 9 pages, 6 figures, to appear in PR