Local order measurement in SnGe alloys and monolayer Sn films on Si with reflection electron energy loss spectrometry

Measurements of local order are demonstrated in Sn-containing alloys and epitaxial monolayer thickness films by analysis of extended-edge energy loss fine structure (EXELFS) data obtained by reflection electron energy loss spectrometry (REELS). These measurements of short-range order provide a complement to the chemical information obtained with REELS and long-range order obtained using reflection high energy electron diffraction. The results suggest that EXELFS measurements are practical for samples mounted on the growth manipulator in a molecular beam epitaxy chamber. Advantages and limitations of reflection EXELFS are discussed

In situ reflection electron energy loss spectroscopy measurements of low temperature surface cleaning for Si molecular beam epitaxy

In situ analysis of hydrocarbon desorption from hydrogen terminated Si(100) surfaces was performed in a silicon molecular beam epitaxy system, using reflection electron energy loss spectroscopy, in conjunction with conventional reflection high energy electron diffraction analysis. Measurements of C K edge core loss intensities demonstrate that this method is sufficiently sensitive to enable in situ analysis of hydrocarbon desorption at fractional monolayer coverages during low-temperature isothermal anneals. Hydrocarbon desorption was found to begin at 115 °C, and at 200 °C complete desorption occurred within 10 min. Hydrocarbon coverage was not measurably affected by operation of ionization gauge filaments during low temperature anneals, but was increased by transient outgassing of the sample holder, and its environs

The actinobacterial transcription factor RbpA binds to the principal sigma subunit of RNA polymerase

RbpA is a small non-DNA-binding transcription factor that associates with RNA polymerase holoenzyme and stimulates transcription in actinobacteria, including Streptomyces coelicolor and Mycobacterium tuberculosis. RbpA seems to show specificity for the vegetative form of RNA polymerase as opposed to alternative forms of the enzyme. Here, we explain the basis of this specificity by showing that RbpA binds directly to the principal σ subunit in these organisms, but not to more diverged alternative σ factors. Nuclear magnetic resonance spectroscopy revealed that, although differing in their requirement for structural zinc, the RbpA orthologues from S. coelicolor and M. tuberculosis share a common structural core domain, with extensive, apparently disordered, N- and C-terminal regions. The RbpA-σ interaction is mediated by the C-terminal region of RbpA and σ domain 2, and S. coelicolor RbpA mutants that are defective in binding σ are unable to stimulate transcription in vitro and are inactive in vivo. Given that RbpA is essential in M. tuberculosis and critical for growth in S. coelicolor, these data support a model in which RbpA plays a key role in the σ cycle in actinobacteria

HCV IRES manipulates the ribosome to promote the switch from translation initiation to elongation.

The internal ribosome entry site (IRES) of the hepatitis C virus (HCV) drives noncanonical initiation of protein synthesis necessary for viral replication. Functional studies of the HCV IRES have focused on 80S ribosome formation but have not explored its role after the 80S ribosome is poised at the start codon. Here, we report that mutations of an IRES domain that docks in the 40S subunit's decoding groove cause only a local perturbation in IRES structure and result in conformational changes in the IRES-rabbit 40S subunit complex. Functionally, the mutations decrease IRES activity by inhibiting the first ribosomal translocation event, and modeling results suggest that this effect occurs through an interaction with a single ribosomal protein. The ability of the HCV IRES to manipulate the ribosome provides insight into how the ribosome's structure and function can be altered by bound RNAs, including those derived from cellular invaders

CATS Near Real Time Data Products: Applications for Assimilation Into the NASA GEOS-5 AGCM

From February 2015 through October 2017, the NASA Cloud-Aerosol Transport System (CATS) backscatter lidar operated on the International Space Station (ISS) as a technology demonstration for future Earth Science Missions, providing vertical measurements of cloud and aerosols properties. Owing to its location on the ISS, a cornerstone technology demonstration of CATS was the capability to acquire, process, and disseminate near-real time (NRT) data within 6 hours of observation time. CATS NRT data has several applications, including providing notification of hazardous events for air traffic control and air quality advisories, field campaign flight planning, as well as for constraining cloud and aerosol distributions in via data assimilation in aerosol transport models. Recent developments in aerosol data assimilation techniques have permitted the assimilation of aerosol optical thickness (AOT), a 2-dimensional column integrated quantity that is reflective of the simulated aerosol loading in aerosol transport models. While this capability has greatly improved simulated AOT forecasts, the vertical position, a key control on aerosol transport, is often not impacted when 2-D AOT is assimilated. Here, we present preliminary efforts to assimilate CATS aerosol observations into the NASA Goddard Earth Observing System version 5 (GEOS-5) atmospheric general circulation model and assimilation system using a 1-D Variational (1-D VAR) ensemble approach, demonstrating the utility of CATS for future Earth Science Missions

CATS Version 2 Aerosol Feature Detection and Applications for Data Assimilation

The Cloud Aerosol Transport System (CATS) lidar has been operating onboard the International Space Station (ISS) since February 2015 and provides vertical observations of clouds and aerosols using total attenuated backscatter and depolarization measurements. From February March 2015, CATS operated in Mode 1, providing backscatter and depolarization measurements at 532 and 1064 nm. CATS began operation in Mode 2 in March 2015, providing backscatter and depolarization measurements at 1064 nm and has continued to operate to the present in this mode. CATS level 2 products are derived from these measurements, including feature detection, cloud aerosol discrimination, cloud and aerosol typing, and optical properties of cloud and aerosol layers. Here, we present changes to our level 2 algorithms, which were aimed at reducing several biases in our version 1 level 2 data products. These changes will be incorporated into our upcoming version 2 level 2 data release in summer 2017. Additionally, owing to the near real time (NRT) data downlinking capabilities of the ISS, CATS provides expedited NRT data products within 6 hours of observation time. This capability provides a unique opportunity for supporting field campaigns and for developing data assimilation techniques to improve simulated cloud and aerosol vertical distributions in models. We additionally present preliminary work toward assimilating CATS observations into the NASA Goddard Earth Observing System version 5 (GEOS-5) global atmospheric model and data assimilation system

Detectors for the James Webb Space Telescope Near-Infrared Spectrograph I: Readout Mode, Noise Model, and Calibration Considerations

We describe how the James Webb Space Telescope (JWST) Near-Infrared Spectrograph's (NIRSpec's) detectors will be read out, and present a model of how noise scales with the number of multiple non-destructive reads sampling-up-the-ramp. We believe that this noise model, which is validated using real and simulated test data, is applicable to most astronomical near-infrared instruments. We describe some non-ideal behaviors that have been observed in engineering grade NIRSpec detectors, and demonstrate that they are unlikely to affect NIRSpec sensitivity, operations, or calibration. These include a HAWAII-2RG reset anomaly and random telegraph noise (RTN). Using real test data, we show that the reset anomaly is: (1) very nearly noiseless and (2) can be easily calibrated out. Likewise, we show that large-amplitude RTN affects only a small and fixed population of pixels. It can therefore be tracked using standard pixel operability maps.Comment: 55 pages, 10 figure

Serum Concentrations of Myostatin and Myostatin-Interacting Proteins do not differ between young and Scarcopenic elderly men

Peer reviewedPostprin