The Upper Atmosphere of HD17156b

HD17156b is a newly-found transiting extrasolar giant planet (EGP) that orbits its G-type host star in a highly eccentric orbit (e~0.67) with an orbital semi-major axis of 0.16 AU. Its period, 21.2 Earth days, is the longest among the known transiting planets. The atmosphere of the planet undergoes a 27-fold variation in stellar irradiation during each orbit, making it an interesting subject for atmospheric modelling. We have used a three-dimensional model of the upper atmosphere and ionosphere for extrasolar gas giants in order to simulate the progress of HD17156b along its eccentric orbit. Here we present the results of these simulations and discuss the stability, circulation, and composition in its upper atmosphere. Contrary to the well-known transiting planet HD209458b, we find that the atmosphere of HD17156b is unlikely to escape hydrodynamically at any point along the orbit, even if the upper atmosphere is almost entirely composed of atomic hydrogen and H+, and infrared cooling by H3+ ions is negligible. The nature of the upper atmosphere is sensitive to to the composition of the thermosphere, and in particular to the mixing ratio of H2, as the availability of H2 regulates radiative cooling. In light of different simulations we make specific predictions about the thermosphere-ionosphere system of HD17156b that can potentially be verified by observations.Comment: 31 pages, 42 eps figure

Vibronic coupling explains the ultrafast carotenoid-to-bacteriochlorophyll energy transfer in natural and artificial light harvesters

The initial energy transfer in photosynthesis occurs between the light-harvesting pigments and on ultrafast timescales. We analyze the carotenoid to bacteriochlorophyll energy transfer in LH2 Marichromatium purpuratum as well as in an artificial light-harvesting dyad system by using transient grating and two-dimensional electronic spectroscopy with 10 fs time resolution. We find that F\"orster-type models reproduce the experimentally observed 60 fs transfer times, but overestimate coupling constants, which leads to a disagreement with both linear absorption and electronic 2D-spectra. We show that a vibronic model, which treats carotenoid vibrations on both electronic ground and excited state as part of the system's Hamiltonian, reproduces all measured quantities. Importantly, the vibronic model presented here can explain the fast energy transfer rates with only moderate coupling constants, which are in agreement with structure based calculations. Counterintuitively, the vibrational levels on the carotenoid electronic ground state play a central role in the excited state population transfer to bacteriochlorophyll as the resonance between the donor-acceptor energy gap and vibrational ground state energies is the physical basis of the ultrafast energy transfer rates in these systems

The Global Ant Genomics Alliance (GAGA)

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Gut microbiota-derived propionate reduces cancer cell proliferation in the liver

Peer reviewedPublisher PD

Placental syncytiotrophoblast constitutes a major barrier to vertical transmission of Listeria monocytogenes.

Listeria monocytogenes is an important cause of maternal-fetal infections and serves as a model organism to study these important but poorly understood events. L. monocytogenes can infect non-phagocytic cells by two means: direct invasion and cell-to-cell spread. The relative contribution of each method to placental infection is controversial, as is the anatomical site of invasion. Here, we report for the first time the use of first trimester placental organ cultures to quantitatively analyze L. monocytogenes infection of the human placenta. Contrary to previous reports, we found that the syncytiotrophoblast, which constitutes most of the placental surface and is bathed in maternal blood, was highly resistant to L. monocytogenes infection by either internalin-mediated invasion or cell-to-cell spread. Instead, extravillous cytotrophoblasts-which anchor the placenta in the decidua (uterine lining) and abundantly express E-cadherin-served as the primary portal of entry for L. monocytogenes from both extracellular and intracellular compartments. Subsequent bacterial dissemination to the villous stroma, where fetal capillaries are found, was hampered by further cellular and histological barriers. Our study suggests the placenta has evolved multiple mechanisms to resist pathogen infection, especially from maternal blood. These findings provide a novel explanation why almost all placental pathogens have intracellular life cycles: they may need maternal cells to reach the decidua and infect the placenta

Resilience of Working Agricultural Landscapes

Many alternative agricultural approaches have been developed as a response to the social and ecological costs of modern industrialized agriculture. These include diversified, organic, sustainably intensified, and ecologically intensified farming systems, each of which addresses different aspects of agriculture as a social-ecological system. However, clear theoretical models that account for human-nature coupling and the importance of scale are lacking. Global change, including climate change, land use change, and other human activities influencing social-ecological systems, is exacerbating uncertainty regarding agriculture system dynamics and increasing the need for comprehensive models that include a dynamical integration of socio-ecological-economic influences. Resilience theory and related ideas such as panarchy have begun to actively inform agricultural science and practice in ways that should help enable current agricultural practices to become more sustainable – and resilient. However, there are several key resilience concepts that have yet to be fully developed within the agricultural research community. In this chapter, we briefly present resilience and its relevance to agriculture, and then we focus on three interrelated resilience ideas that have received less attention in the agriculture literature: (1) the functional attributes which underpin resilience; (2) the possibility of alternative regimes in agricultural systems and the implications for both continued agricultural production and the ecological landscapes in which agricultural systems are embedded; and (3) the relevance of scale for understanding and managing complex agricultural systems. We finish by discussing a path forward for the continued development of theories that can adequately encompass the full complexity of agricultural systems

Survey of ortho-H2D+(1_{1,0}-1_{1,1}) in dense cloud cores

We present a survey of the ortho-H2D+(1_{1,0}-1_{1,1}) line toward a sample of 10 starless cores and 6 protostellar cores, carried out at the Caltech Submillimeter Observatory. The high diagnostic power of this line is revealed for the study of the chemistry, and the evolutionary and dynamical status of low-mass dense cores. The line is detected in 7 starless cores and in 4 protostellar cores. N(ortho-H2D+) ranges between 2 and 40x10^{12} cm^{-2} in starless cores and between 2 and 9x10^{12} cm^{-2} in protostellar cores. The brightest lines are detected toward the densest and most centrally concentrated starless cores, where the CO depletion factor and the deuterium fractionation are also largest. The large scatter observed in plots of N(ortho-H2D+) vs. the observed deuterium fractionation and vs. the CO depletion factor is likely to be due to variations in the ortho-to-para (o/p) ratio of H2D+ from >0.5 for T_{kin} < 10 K gas in pre-stellar cores to ~0.03 (consistent with T_{kin} ~15 K for protostellar cores). The two Ophiuchus cores in our sample also require a relatively low o/p ratio (~0.3). Other parameters, including the cosmic-ray ionization rate, the CO depletion factor (or, more in general, the depletion factor of neutral species), the volume density, the fraction of dust grains and PAHs also largely affect the ortho-H2D+ abundance. The most deuterated and H2D+-rich objects (L429, L1544, L694-2 and L183) are reproduced by chemical models of centrally concentrated (central densties ~10^{6} cm^{-3}) cores with chemical ages between 10^4 and 10^6 yr. Upper limits of the para-H3O+ (1_1- -2_1+) and para-D2H+ (1_{1,0}-1_{0,1}) lines are also given. (Abridged)Comment: 29 pages, 6 figures. To appear in A&

Subjective evaluation of the environmental quality in China's industrial corridors.

Based on 270 questionnaire surveys in 8 cities of 5 industrial corridors in China, this study aims to examine the effects of industry construction on the evaluation of environmental pollution, natural environment, built environment, personal perception and development and policy. The results show that the evaluations on environmental pollution and landscape design are both below the medium level, but the evaluations of the living comfort and safety are both above the medium level. Further analysis, females usually give lower evaluation scores than males, and age and health situations are negatively related to the evaluation results; People indicate a great desire to reduce the environmental pollution and protect the natural environment. Moreover, the landscape was analysed using colour extraction techniques based on video recording, there are significant correlations between industrial pixel ratio and evaluation results of air quality, vegetation pixel ratio and evaluation results of river water quality, and public facilities pixel ratio and evaluation results of comfort levels

RNA editing signature during myeloid leukemia cell differentiation

Adenosine deaminases acting on RNA (ADARs) are key proteins for hematopoietic stem cell self-renewal and for survival of differentiating progenitor cells. However, their specific role in myeloid cell maturation has been poorly investigated. Here we show that ADAR1 is present at basal level in the primary myeloid leukemia cells obtained from patients at diagnosis as well as in myeloid U-937 and THP1 cell lines and its expression correlates with the editing levels. Upon phorbol-myristate acetate or Vitamin D3/granulocyte macrophage colony-stimulating factor (GM-CSF)-driven differentiation, both ADAR1 and ADAR2 enzymes are upregulated, with a concomitant global increase of A-to-I RNA editing. ADAR1 silencing caused an editing decrease at specific ADAR1 target genes, without, however, interfering with cell differentiation or with ADAR2 activity. Remarkably, ADAR2 is absent in the undifferentiated cell stage, due to its elimination through the ubiquitin–proteasome pathway, being strongly upregulated at the end of the differentiation process. Of note, peripheral blood monocytes display editing events at the selected targets similar to those found in differentiated cell lines. Taken together, the data indicate that ADAR enzymes play important and distinct roles in myeloid cells