The effects of sample size on population genomic analyses – implications for the tests of neutrality

Background: One of the fundamental measures of molecular genetic variation is the Watterson's estimator (Θ), which is based on the number of segregating sites. The estimation of Θ is unbiased only under neutrality and constant population growth. It is well known that the estimation of Θ is biased when these assumptions are violated. However, the effects of sample size in modulating the bias was not well appreciated. Results: We examined this issue in detail based on large-scale exome data and robust simulations. Our investigation revealed that sample size appreciably influences Θ estimation and this effect was much higher for constrained genomic regions than that of neutral regions. For instance, Θ estimated for synonymous sites using 512 human exomes was 1.9 times higher than that obtained using 16 exomes. However, this difference was 2.5 times for the nonsynonymous sites of the same data. We observed a positive correlation between the rate of increase in Θ estimates (with respect to the sample size) and the magnitude of selection pressure. For example, Θ estimated for the nonsynonymous sites of highly constrained genes (dN/dS < 0.1) using 512 exomes was 3.6 times higher than that estimated using 16 exomes. In contrast this difference was only 2 times for the less constrained genes (dN/dS > 0.9). Conclusions: The results of this study reveal the extent of underestimation owing to small sample sizes and thus emphasize the importance of sample size in estimating a number of population genomic parameters. Our results have serious implications for neutrality tests such as Tajima D, Fu-Li D and those based on the McDonald and Kreitman test: Neutrality Index and the fraction of adaptive substitutions. For instance, use of 16 exomes produced 2.4 times higher proportion of adaptive substitutions compared to that obtained using 512 exomes (24 % vs 10 %). © 2016 Subramanian

Using Laser-Induced Incandescence To Measure Soot in Exhaust

An instrumentation system exploits laser-induced incandescence (LII) to measure the concentration of soot particles in an exhaust stream from an engine, furnace, or industrial process that burns hydrocarbon fuel. In comparison with LII soot-concentration-measuring systems, this system is more complex and more capable

SYNTHESIS AND DEVICE CHARACTERIZATION OF FUNCTIONALIZED PENTACENES AND ANTHRADITHIOPHENES

Research on pi-conjugated organic materials in the recent past has produced enormous developments in the field of organic electronics and it is mainly due to their applications in electronic devices such as organic field effect transistors (OFETs), organic light emitting diodes (OLEDs) and organic photovoltaic cells (OPVs). The primary goal of this research work is to design and synthesize high performing charge transport organic semiconductors. One of the criteria for better performance of the organic thin film transistor (OTFT) is to have high uniform thin film morphology of the organic semiconductor layer on the substrate. The first project in this dissertation has been directed towards improving the thin film morphology of the functionalized pentacenes through liquid crystalline behaviour. The results have suggested the possibility of thermotropic liquid crystalline phases in 6,13-bis(diisopropylhexylsilylethynyl) pentacene which has no pi-stacking in its solid state and the presence of silyl group at the peri-position is crucial for the stability of the functionalized pentacenes. In the second project, i have investigated the effect of alkyl groups with varying chain length on the anthradithiophene chromophore on the performance of the charge transporting devices. Organic blend cell based on solution processable 2,8-diethyl-5,12-bis(triethylsilylethynyl) anthradithiophene has showed 1% power conversion efficiency and the performance is mainly attributed to the large crystalline phase segregation of the functionalized anthradithiophene from the amorphous soluble fullerene derivative matrix. OTFT study on alkyl substituted functionalized anthradithiophenes suggested the need of delegate balance between thin film morphology and the crystal packing. Third project has been directed towards synthesizing halogen substituted functionalized anthradithiophenes and their influence in the performance of OFETs. OTFT made of 2,8-difluoro-5,12-bis(triethylsilylethynyl) anthradithiophene produced devices with thin film hole mobilities greater than 1 cm2/Vs. The result suggested that the device is not contact limited rather this high performance OTFTs are due to the contact induced crystallinity of the organic semiconductor

A rare association of serous cystadenoma of the pancreas with mediastinal lipoma: a case report

Cystic lesions of pancreas include a myriad of different conditions ranging from the common pseudocyst to unusual cystic neoplasm. With the development of better imaging modalities, cystic neoplasms are diagnosed with greater frequency and accuracy leading on to better understanding of the natural course of these lesions. Serous cystadenoma is one of the rare neoplasms of the pancreas that is unique for its benign nature. Most of the time surgery is indicated for the symptom of pain when the lesion enlarges. Surgery may also be indicated due to the fact that, it may not always be possible to dogmatically differentiate it from the potentially malignant counterpart radiologically. One of the interesting aspects about serous cystadenoma is its association with other systemic disorders like von Hippel Lindau syndrome. Herein we report a rare association of serous cystadenoma with mediastinal lipoma, which has not been reported in the literature

Spray pyrolisis deposition and characterization of Cd-TiO2 thin film for photocatalytic and photovoltaic applications

In the present paper, an innovative approach to enhance the photocatalytic efficiency and energy of photovoltaics by modifying the surface morphology of a TiO2 is demonstrated.The photovoltaic device provides sustainable power efficiency in TiO2 (TO) and Cd-TiO2 (CTO) thin films grown through spray pyrolysis. The structural and optical properties of the prepared undoped and Cd doped TiO2 thin films were studied. The morphology and content of the pro­duced samples were studied using scanning electron microscopy (SEM with EDAX). A UV-Vis spectrophotometer was used to record the optical absorption spectra of TiO2 nanoparticles. XRD analysis showed that TO and CTO had anatase structure, and the average crystalline size was calculated as 132.0 nm.The photocatalytic efficiency of TO and CTO for degradation of Rodhamine B (RhB) dye was examined. Also, power-voltage (P-V) and photocurrent-voltage (I-V) output current intensity relations were discussed