Dynamic Ligand Discrimination in the Notch Signaling Pathway

The Notch signaling pathway comprises multiple ligands that are used in distinct biological contexts. In principle, different ligands could activate distinct target programs in signal-receiving cells, but it is unclear how such ligand discrimination could occur. Here, we show that cells use dynamics to discriminate signaling by the ligands Dll1 and Dll4 through the Notch1 receptor. Quantitative single-cell imaging revealed that Dll1 activates Notch1 in discrete, frequency-modulated pulses that specifically upregulate the Notch target gene Hes1. By contrast, Dll4 activates Notch1 in a sustained, amplitude-modulated manner that predominantly upregulates Hey1 and HeyL. Ectopic expression of Dll1 or Dll4 in chick neural crest produced opposite effects on myogenic differentiation, showing that ligand discrimination can occur in vivo. Finally, analysis of chimeric ligands suggests that ligand-receptor clustering underlies dynamic encoding of ligand identity. The ability of the pathway to utilize ligands as distinct communication channels has implications for diverse Notch-dependent processes

Rules for biological regulation based on error minimization

The control of gene expression involves complex mechanisms that show large variation in design. For example, genes can be turned on either by the binding of an activator (positive control) or the unbinding of a repressor (negative control). What determines the choice of mode of control for each gene? This study proposes rules for gene regulation based on the assumption that free regulatory sites are exposed to nonspecific binding errors, whereas sites bound to their cognate regulators are protected from errors. Hence, the selected mechanisms keep the sites bound to their designated regulators for most of the time, thus minimizing fitness-reducing errors. This offers an explanation of the empirically demonstrated Savageau demand rule: Genes that are needed often in the natural environment tend to be regulated by activators, and rarely needed genes tend to be regulated by repressors; in both cases, sites are bound for most of the time, and errors are minimized. The fitness advantage of error minimization appears to be readily selectable. The present approach can also generate rules for multi-regulator systems. The error-minimization framework raises several experimentally testable hypotheses. It may also apply to other biological regulation systems, such as those involving protein-protein interactions.Comment: biological physics, complex networks, systems biology, transcriptional regulation http://www.weizmann.ac.il/complex/tlusty/papers/PNAS2006.pdf http://www.pnas.org/content/103/11/3999.ful

Continuous weak measurement of quantum coherent oscillations

We consider the problem of continuous quantum measurement of coherent oscillations between two quantum states of an individual two-state system. It is shown that the interplay between the information acquisition and the backaction dephasing of the oscillations by the detector imposes a fundamental limit, equal to 4, on the signal-to-noise ratio of the measurement. The limit is universal, e.g., independent of the coupling strength between the detector and system, and results from the tendency of quantum measurement to localize the system in one of the measured eigenstates

Quantum-Limited Measurement and Information in Mesoscopic Detectors

We formulate general conditions necessary for a linear-response detector to reach the quantum limit of measurement efficiency, where the measurement-induced dephasing rate takes on its minimum possible value. These conditions are applicable to both non-interacting and interacting systems. We assess the status of these requirements in an arbitrary non-interacting scattering based detector, identifying the symmetries of the scattering matrix needed to reach the quantum limit. We show that these conditions are necessary to prevent the existence of information in the detector which is not extracted in the measurement process.Comment: 13 pages, 1 figur

An Electronic Mach-Zehnder Interferometer

Double-slit electron interferometers, fabricated in high mobility two-dimensional electron gas (2DEG), proved to be very powerful tools in studying coherent wave-like phenomena in mesoscopic systems. However, they suffer from small fringe visibility due to the many channels in each slit and poor sensitivity to small currents due to their open geometry. Moreover, the interferometers do not function in a high magnetic field, namely, in the quantum Hall effect (QHE) regime, since it destroys the symmetry between left and right slits. Here, we report on the fabrication and operation of a novel, single channel, two-path electron interferometer that functions in a high magnetic field. It is the first electronic analog of the well-known optical Mach-Zehnder (MZ) interferometer. Based on single edge state and closed geometry transport in the QHE regime the interferometer is highly sensitive and exhibits very high visibility (62%). However, the interference pattern decays precipitously with increasing electron temperature or energy. While we do not understand the reason for the dephasing we show, via shot noise measurement, that it is not a decoherence process that results from inelastic scattering events.Comment: to appear in Natur

Dephasing and Measurement Efficiency via a Quantum Dot Detector

We study charge detection and controlled dephasing of a mesoscopic system via a quantum dot detector (QDD), where the mesoscopic system and the QDD are capacitively coupled. The QDD is considered to have coherent resonant tunnelling via a single level. It is found that the dephasing rate is proportional to the square of the conductance of the QDD for the Breit-Wigner model, showing that the dephasing is completely different from the shot noise of the detector. The measurement rate, on the other hand, shows a dip near the resonance. Our findings are peculiar especially for a symmetric detector in the following aspect: The dephasing rate is maximum at resonance of the QDD where the detector conductance is insensitive to the charge state of the mesoscopic system. As a result, the efficiency of the detector shows a dip and vanishes at resonance, in contrast to the single-channel symmetric non-resonant detector that has always a maximum efficiency. We find that this difference originates from a very general property of the scattering matrix: The abrupt phase change exists in the scattering amplitudes in the presence of the symmetry, which is insensitive to the detector current but {\em stores} the information of the quantum state of the mesoscopic system.Comment: 7 pages, 3 figure

Storage Qubits and Their Potential Implementation Through a Semiconductor Double Quantum Dot

In the context of a semiconductor based implementation of a quantum computer the idea of a quantum storage bit is presented and a possible implementation using a double quantum dot structure is considered. A measurement scheme using a stimulated Raman adiabatic passage is discussed.Comment: Revised version accepted for publication in Phys.Rev. B. 19 pages, 4 eps figure

Entanglement of solid-state qubits by measurement

We show that two identical solid-state qubits can be made fully entangled (starting from completely mixed state) with probability 1/4 just measuring them by a detector, equally coupled to the qubits. This happens in the case of repeated strong (projective) measurements as well as in a more realistic case of weak continuous measurement. In the latter case the entangled state can be identified by a flat spectrum of the detector shot noise, while the non-entangled state (probability 3/4) leads to a spectral peak at the Rabi frequency with the maximum peak-to-pedestal ratio of 32/3.Comment: 5 pages, 2 figure

Comments on gluon scattering amplitudes via AdS/CFT

In this article we consider n gluon color ordered, planar amplitudes in N=4 super Yang Mills at strong 't Hooft coupling. These amplitudes are approximated by classical surfaces in AdS_5 space. We compute the value of the amplitude for a particular kinematic configuration for a large number of gluons and find that the result disagrees with a recent guess for the exact value of the amplitude. Our results are still compatible with a possible relation between amplitudes and Wilson loops. In addition, we also give a prescription for computing processes involving local operators and asymptotic states with a fixed number of gluons. As a byproduct, we also obtain a string theory prescription for computing the dual of the ordinary Wilson loop, Tr P exp[ i\oint A ], with no couplings to the scalars. We also evaluate the quark-antiquark potential at two loops.Comment: 27 pages, 9 figures,v3:minor correction