Implications of movement for species distribution models - rethinking environmental data tools

Movement is considered an essential process in shaping the distributions of species. Nevertheless, most species distribution models (SDMs) still focus solely on environment-species relationships to predict the occurrence of species. Furthermore, the currently used indirect estimates of movement allow to assess habitat accessibility, but do not provide an accurate description of movement. Better proxies of movement are needed to assess the dispersal potential of individual species and to gain a more practical insight in the interconnectivity of communities. Telemetry techniques are rapidly evolving and highly capable to provide explicit descriptions of movement, but their usefulness for SDMs will mainly depend on the ability of these models to deal with hitherto unconsidered ecological processes. More specifically, the integration of movement is likely to affect the environmental data requirements as the connection between environmental and biological data is crucial to provide reliable results. Mobility implies the occupancy of a continuum of space, hence an adequate representation of both geographical and environmental space is paramount to study mobile species distributions. In this context, environmental models, remote sensing techniques and animal-borne environmental sensors are discussed as potential techniques to obtain suitable environmental data. In order to provide an in-depth review of the aforementioned methods, we have chosen to use the modelling of fish distributions as a case study. The high mobility of fish and the often highly variable nature of the aquatic environment generally complicate model development, making it an adequate subject for research. Furthermore, insight into the distribution of fish is of great interest for fish stock assessments and water management worldwide, underlining its practical relevance

Estuarine behaviour of European silver eel (<i>Anguilla anguilla</i>) in the Scheldt estuary

Estuaries are among the most productive ecosystems in the world and are characterised by high habitat diversity. As transition areas between inland rivers and the open sea, they function as transport zones for diadromous species like the European eel (Anguilla anguilla), a catadromous fish species that migrates to the Sargasso Sea for spawning. However, information on the migratory behaviour of eel in estuaries is scarce. Therefore, more insight is needed to efficiently restore and conserve the species. We tracked 47 eels with acoustic telemetry between July 2012 and October 2015 and analysed their behaviour from the Braakman creek into the Scheldt Estuary, separated by a tidal barrier. Eels arrived in the Braakman between mid-summer and early winter and stayed there on average 44 days (0 - 578 days). As such, arrival in the Scheldt Estuary was much later: between early autumn and early winter. The average residence time in the Scheldt Estuary was considerably shorter than in the Braakman, and was only five days (0 - 64 days). The long residence time in the Braakman was probably due to the discontinuous operation of the tidal barrier, which is used to control the water level in the upstream wetland area. This resulted in a discontinuous flow conditions, leading to searching behaviour in eels. Eventually 37 eels did pass the sluice and reached the Scheldt Estuary; the 10 eels which did not pass the sluice were probably caught by a commercial eel fisherman in the Braakman creek. In the Scheldt Estuary, 26 eels migrated towards the sea, whereas eight took the opposite direction and three were only detected at the first receivers downstream of the sluice. The eight eels that did not migrate towards the sea showed estuarine retention behaviour. They could have been injured by the tidal barrier or missed the right moment to migrate, and could be waiting in the estuary until favourable conditions are met to proceed their journey. Our results indicate that eel migration is obstructed by a tidal barrier, which resulted in delayed eel migration. As the migratory period occurred from mid-summer to early winter, this information can be implemented in management plans such as environmental windows to open the sluice during eel migration if circumstances allow such measurements

A comparison of smooth basis constructions for isogeometric analysis

In order to perform isogeometric analysis with increased smoothness on complex domains, trimming, variational coupling or unstructured spline methods can be used. The latter two classes of methods require a multi-patch segmentation of the domain, and provide continuous bases along patch interfaces. In the context of shell modeling, variational methods are widely used, whereas the application of unstructured spline methods on shell problems is rather scarce. In this paper, we therefore provide a qualitative and a quantitative comparison of a selection of unstructured spline constructions, in particular the D-Patch, Almost-$C^1$, Analysis-Suitable $G^1$ and the Approximate $C^1$ constructions. Using this comparison, we aim to provide insight into the selection of methods for practical problems, as well as directions for future research. In the qualitative comparison, the properties of each method are evaluated and compared. In the quantitative comparison, a selection of numerical examples is used to highlight different advantages and disadvantages of each method. In the latter, comparison with weak coupling methods such as Nitsche's method or penalty methods is made as well. In brief, it is concluded that the Approximate $C^1$ and Analysis-Suitable $G^1$ converge optimally in the analysis of a bi-harmonic problem, without the need of special refinement procedures. Furthermore, these methods provide accurate stress fields. On the other hand, the Almost-$C^1$ and D-Patch provide relatively easy construction on complex geometries. The Almost-$C^1$ method does not have limitations on the valence of boundary vertices, unlike the D-Patch, but is only applicable to biquadratic local bases. Following from these conclusions, future research directions are proposed, for example towards making the Approximate $C^1$ and Analysis-Suitable $G^1$ applicable to more complex geometries

The role of hybrid ubiquitin chains in the MyD88 and other innate immune signalling pathways

The adaptor protein MyD88 is required for signal transmission by Toll-like Receptors (TLRs) and receptors of the interleukin 1 (IL-1) family of cytokines. MyD88 signalling triggers the formation of Lys63-linked and Met1-linked ubiquitin (K63-Ub, M1-Ub) chains within minutes. The K63-Ub chains, which are formed by the E3 ubiquitin ligases TRAF6, Pellino1 and Pellino2, activate TAK1, the master kinase that switches on mitogen-activated protein (MAP) kinase cascades and initiates activation of the canonical IκB kinase (IKK) complex. The M1-Ub chains, which are formed by the Linear Ubiquitin chain Assembly Complex (LUBAC), bind to the NEMO component of the IKK complex and are required for TAK1 to activate IKKs, but not MAP kinases. An essential E3 ligase-independent role of TRAF6 is to recruit LUBAC into the MyD88 signalling complex, where it recognises preformed K63-Ub chains attached to protein components of these complexes, such as IRAK1, producing ubiquitin chains containing both types of linkage, termed K63/M1-Ub hybrids. The formation of K63/M1-Ub hybrids, which is a feature of several innate immune signalling pathways, permits the co-recruitment of proteins that interact with either K63-Ub or M1-Ub chains. Two likely roles for K63/M1- Ub hybrids are to facilitate the TAK1-dependent activation of the IKK complex and to prevent the hyper-activation of these kinases by recruiting A20 and A20-binding inhibitor of NF-κB1 (ABIN1). These proteins restrict activation of the TAK1 and IKK complexes, probably by competing with them for binding to K63/M1-Ub hybrids. The formation of K63/M1-Ub hybrids may also regulate the rate at which the ubiquitin linkages in these chains are hydrolysed. The IKK-catalysed phosphorylation of some of its substrates permits their recognition by the E3 ligase SCFβ TRCP, leading to their Lys48-linked ubiquitylation and proteasomal degradation. Innate immune signalling is therefore controlled by the formation and destruction of three different types of ubiquitin linkage

The genome of the seagrass <i>Zostera marina</i> reveals angiosperm adaptation to the sea

Seagrasses colonized the sea on at least three independent occasions to form the basis of one of the most productive and widespread coastal ecosystems on the planet. Here we report the genome of Zostera marina (L.), the first, to our knowledge, marine angiosperm to be fully sequenced. This reveals unique insights into the genomic losses and gains involved in achieving the structural and physiological adaptations required for its marine lifestyle, arguably the most severe habitat shift ever accomplished by flowering plants. Key angiosperm innovations that were lost include the entire repertoire of stomatal genes, genes involved in the synthesis of terpenoids and ethylene signalling, and genes for ultraviolet protection and phytochromes for far-red sensing. Seagrasses have also regained functions enabling them to adjust to full salinity. Their cell walls contain all of the polysaccharides typical of land plants, but also contain polyanionic, low-methylated pectins and sulfated galactans, a feature shared with the cell walls of all macroalgae and that is important for ion homoeostasis, nutrient uptake and O2/CO2 exchange through leaf epidermal cells. The Z. marina genome resource will markedly advance a wide range of functional ecological studies from adaptation of marine ecosystems under climate warming, to unravelling the mechanisms of osmoregulation under high salinities that may further inform our understanding of the evolution of salt tolerance in crop plants

Differential effects of Atomoxetine on executive functioning and lexical decision in Attention-Deficit/Hyperactivity Disorder and Reading Disorder

Objective: The effects of a promising pharmacological treatment for attention-deficit/hyperactivity disorder (ADHD), atomoxetine, were studied on executive functions in both ADHD and reading disorder (RD) because earlier research demonstrated an overlap in executive functioning deficits in both disorders. In addition, the effects of atomoxetine were explored on lexical decision. Methods: Sixteen children with ADHD, 20 children with ADHD + RD, 21 children with RD, and 26 normal controls were enrolled in a randomized placebo-controlled crossover study. Children were measured on visuospatial working memory, inhibition, and lexical decision on the day of randomization and following two 28-day medication periods. Results: Children with ADHD + RD showed improved visuospatial working memory performance and, to a lesser extent, improved inhibition following atomoxetine treatment compared to placebo. No differential effects of atomoxetine were found for lexical decision in comparison to placebo. In addition, no effects of atomoxetine were demonstrated in the ADHD and RD groups. Conclusion: Atomoxetine improved visuospatial working memory and to a lesser degree inhibition in children with ADHD + RD, which suggests differential developmental pathways for co-morbid ADHD + RD as compared to ADHD and RD alone