Extreme suppression of lateral floret development by a single amino acid change in the VRS1 transcription factor

Increasing grain yield is an endless challenge for cereal crop breeding. In barley, grain number is mainly controlled by Six-rowed spike 1 (Vrs1) that encodes a homeodomain leucine zipper class I transcription factor. However, little is known about the genetic basis of grain size. Here we show that extreme suppression of lateral florets contributes to enlarged grains in deficiens barley. Through a combination of fine mapping and resequencing deficiens mutants we have identified that a single amino acid substitution at a putative phosphorylation site in VRS1 is responsible for the deficiens phenotype. deficiens mutant alleles confer an increase in grain size, reduction in plant height and a significant increase in thousand grain weight in contemporary cultivated germplasm. Haplotype analysis revealed that barley carrying the deficiens allele (Vrs1.t1) originated from two-rowed types carrying the Vrs1.b2 allele, predominantly found in germplasm from Northern Africa. In situ hybridization of histone H4, a marker for cell cycle or proliferation, showed weaker expression in the lateral spikelets compared to central spikelets in deficiens. Transcriptome analysis revealed that a number of histone superfamily genes were upregulated in the deficiens mutant suggesting that enhanced cell proliferation in the central spikelet may contribute to larger grains. Our data suggest that grain yield can be improved by suppressing the development of specific organs that are not positively involved in sink/source relationships.</p

Multiple aster formation is frequently observed in bovine oocytes retrieved from 1 day-stored ovaries

We have recently reported that multiple aster formation after IVF was one of the factors negatively affecting to developmental competence of vitrified-warmed bovine matured oocytes, and that a short-term culture of the post-warm oocytes with an inhibitor of Rho-associated coiled-coil kinase (ROCK) suppressed the multiple aster formation and improved the blastocyst yield. The present study was conducted to investigate whether increased multiple aster formation following IVF can be involved in impaired developmental competence of stored ovary-derived bovine oocytes. Oocytes retrieved from 1-day stored ovaries had lower developmental potential to Day 8 blastocysts when compared with those from fresh ovaries (37 vs 63%). Immunostaining against -tubulin 10 h post-IVF revealed that the higher incidence of multiple aster formation occurred in oocytes retrieved from stored ovaries than fresh ovaries (31 vs 15%). Treatment of post-IVM oocytes with ROCK inhibitor for 2 h significantly suppressed the incidence of multiple aster formation (10 vs 32% in control group). However, the suppressing effect of ROCK inhibitor on multiple aster formation in IVM/IVF oocytes did not improve blastocyst yield from stored ovary-derived oocytes (41 vs 37% in control group). These results suggest that higher incidence of multiple aster formation by bovine ovary storage was not responsible for decreased developmental competence of IVF oocytes.ArticleZYGOTE.24(1):115-120(2015)journal articl

Abukuma and Sanbagawa metamorphic belts in the Kanto district

'29th IGC field trip guide book' vol.5, C08: [Editors] Hirokazu Kato, Harufumi Noro「IGC巡検ガイドブック」 第5巻: [編者] 加藤 碵一, 野呂 春

Adverse effect of cake collapse on the functional integrity of freeze-dried bull spermatozoa

Under optimal freeze-drying conditions, solutions exhibit a cake-like porous structure. However, if the solution temperature is higher than the glass transition temperature of the maximally freeze-concentrated phase (Tg′) during drying phase, the glassy matrix undergoes viscous flow, resulting in cake collapse. The purpose of the present study was to investigate the effect of cake collapse on the integrity of freeze-dried bull spermatozoa. In a preliminary experiment, factors affecting the Tg′ of conventional EGTA buffer (consisting of Tris–HCl, EGTA and NaCl) were investigated in order to establish the main experimental protocol because EGTA buffer Tg′ was too low (−45.0 °C) to suppress collapse. Modification of the EGTA buffer composition by complete removal of NaCl and addition of trehalose (mEGTA buffer) resulted in an increase of Tg′ up to −27.7 °C. In the main experiment, blastocyst yields after ooplasmic injection of freeze-dried sperm preserved in collapsed cakes (drying temperature: 0 or −15 °C) were significantly lower than those of sperm preserved in non-collapsed cake (drying temperature: −30 °C). In conclusion, freeze-dried cake collapse may be undesirable for maintaining sperm functions to support embryonic development, and can be inhibited by controlling both Tg′ of freeze-drying buffer and temperature during the drying phase.ArticleCRYOBIOLOGY. 68(3):354-360 (2014)journal articl

High revivability of vitrified-warmed bovine mature oocytes after recovery culture with alpha-tocopherol

online publication: 27 January 2015The objective of this study was to investigate whether developmental competence of vitrified–warmed bovine oocytes can be improved by antioxidant treatment during recovery culture. In experiment 1, one of the two antioxidants (either l-ascorbic acid or α-tocopherol) was added as a supplement to the recovery culture medium to which postwarming oocytes were exposed for 2 h before IVF. The exposure to α-tocopherol had a positive effect on rescuing the oocytes as assessed by the blastocyst yield 8 days after the IVF (35.1–36.3% vs 19.2–25.8% in untreated postwarming oocytes). Quality of expanding blastocysts harvested on Day 8 was comparable between α-tocopherol-treated vitrification group and fresh control group in terms of total cell number and chromosomal ploidy. In experiment 2, level of reactive oxygen species, mitochondrial activity, and distribution of cortical granules in α-tocopherol-treated postwarming oocytes were assessed. No obvious differences from the control data were found in these parameters. However, the treatment with α-tocopherol increased the percentage of zygotes exhibiting normal single aster formation (90.3% vs 48.0% in untreated postwarming oocytes; 10 h post-IVF). It was concluded that α-tocopherol treatment of vitrified–warmed bovine mature oocytes during recovery culture can improve their revivability, as shown by the high blastocyst yield and the higher mean total cell number in the blastocysts.ArticleREPRODUCTION. 149(4):347-355 (2015)journal articl

Geochemical variations in the Central Southern Volcanic Zone, Chile (38-43°S): The role of fluids in generating arc magmas

We present new Sr-Nd-Pb-Hf-O isotope data from the volcanic arc (VA, volcanic front and rear arc) in Chile and the backarc (BA) in Argentina of the Central Southern Volcanic Zone in Chile (CSVZ; 38-43°S). Compared to the Transitional (T) SVZ (34.5-38°S; Jacques et al., 2013), the CSVZ VA has erupted greater volumes over shorter time intervals (Völker et al., 2011) and produced more tholeiitic melts. Although the CSVZ VA monogenetic cones are similar to the TSVZ VA samples, the CSVZ VA stratovolcanoes have higher ratios of highly fluid-mobile to less fluid-mobile trace elements (e.g. U/Th, Pb/Ce, Ba/Nb) and lower more- to less-incompatible fluid-immobile element ratios (e.g. La/Yb, La/Sm, Th/Yb, Nb/Yb), consistent with an overall higher fluid flux and greater degree of flux melting beneath the CSVZ stratovolcanoes compared to the CSVZ monogenetic centers and the TSVZ VA. The CSVZ monogenetic centers overlap the TSVZ in Sr and Nd isotopes, but the stratovolcanoes are shifted to higher Sr and/or Nd isotope ratios. The Pb isotopic composition of the CSVZ overlaps the TSVZ, which is clearly dominated by the composition of the trench sediments, but the CSVZ monogenetic samples extend to less radiogenic Pb isotope ratios. δ18Omelt from the CSVZ stratovolcano samples are below the MORB range, whereas the CSVZ monogenetic and the TSVZ samples fall within and slightly above the MORB range. The Nd and Hf isotopic ratios of the CSVZ VA extend to more radiogenic compositions than found in the TSVZ VA, indicating a greater contribution from a more depleted source. These correlations are interpreted to reflect derivation of fluids from hydrothermally altered oceanic crust and/or serpentinized upper mantle of the subducting plate. CSVZ BA basalts largely overlap TSVZ BA basalts, displaying less or no subduction influence compared to the VA, but some CSVZ BA basalts tap more enriched mantle, possibly subcontinental lithosphere, with distinctively lower Nd and Hf and elevated 207Pb/204Pb and 208Pb/204Pb isotope ratios

Establishing a comprehensive web-based analysis platform for Nicotiana benthamiana genome and transcriptome

ベンサミアナタバコの遺伝子発現データベースを構築 実験モデル植物の遺伝子解析ツールをウェブで提供. 京都大学プレスリリース. 2024-12-12.Nicotiana benthamiana has long served as a crucial plant material extensively used in plant physiology research, particularly in the field of plant pathology, because of its high susceptibility to plant viruses. Additionally, it serves as a production platform to test vaccines and other valuable substances. Among its approximately 3.1 Gb genome, 57 583 genes have been annotated within a 61 Mb region. We created a comprehensive and easy-to-use platform to use transcriptomes for modern annotation. These tools allow to visualize gene expression profiles, draw molecular evolutionary phylogenetic trees of gene families, perform functional enrichment analyses, and facilitate output downloads. To demonstrate their utility, we analyzed the gene expression profiles of enzymes within the nicotine biosynthesis pathway, a secondary metabolic pathway characteristic of the Nicotiana genus. Using the developed tool, expression profiles of the nicotine biosynthesis pathway genes were generated. The expression patterns of eight gene groups in the pathway were strongly expressed in the roots and weakly expressed in leaves and flowers of N. benthamiana. The results were consistent with the established gene expression profiles in Nicotiana tabacum and provided insights into gene family composition and expression trends. The compilation of this database tool can facilitate genetic analysis of N. benthamiana in the future

Inefficient double-strand DNA break repair is associated with increased fasciation in Arabidopsis BRCA2 mutants

BRCA2 is a breast tumour susceptibility factor with functions in maintaining genome stability through ensuring efficient double-strand DNA break (DSB) repair via homologous recombination. Although best known in vertebrates, fungi, and higher plants also possess BRCA2-like genes. To investigate the role of Arabidopsis BRCA2 genes in DNA repair in somatic cells, transposon insertion mutants of the AtBRCA2a and AtBRCA2b genes were identified and characterized. atbrca2a-1 and atbrca2b-1 mutant plants showed hypersensitivity to genotoxic stresses compared to wild-type plants. An atbrca2a-1/atbrca2b-1 double mutant showed an additive increase in sensitivity to genotoxic stresses compared to each single mutant. In addition, it was found that atbrca2 mutant plants displayed fasciation and abnormal phyllotaxy phenotypes with low incidence, and that the ratio of plants exhibiting these phenotypes is increased by γ-irradiation. Interestingly, these phenotypes were also induced by γ-irradiation in wild-type plants. Moreover, it was found that shoot apical meristems of the atbrca2a-1/atbrca2b-1 double mutant show altered cell cycle progression. These data suggest that inefficient DSB repair in the atbrca2a-1/atbrca2b-1 mutant leads to disorganization of the programmed cell cycle of apical meristems