Novel approaches to statistical shape modelling of bone

The femur is the longest bone in the human body and serves the important purposes of load-bearing and allowing bipedal locomotion. Accurate modelling of the variation in shape within the healthy adult population can be useful for a variety of applications: from the mere anatomical description of its features, in order to better understand its function, to more complex tasks such as pathology detection or surgical planning. Statistical Shape Modelling (SSM) is a well-established technique that enables to capture the variability within a set of training shapes and describes it with a reduced set of variables. The aim of this thesis is to evaluate the performance of a SSM based on a point cloud representation of shape, and introduce and test subsequent improvements to the modelling process that can increase its clinical relevance and scope of application. The standard approach to SSM employs a dimension-reducing technique, generally by means of Principal Component Analysis (PCA). However, this approach favours the compactness of the model, thus not focusing on other aspects that may be more relevant to clinical practice. Although rotation of the principal components is commonly performed as a post-processing step in statistical analysis involving PCA, it is not routinely applied in SSM. By applying this class of rotation, the components' effects are more localised, allowing a better interpretation, understanding and classification of pathological deformities. Among other possible representations, the Medial Axis Transform (MAT) could offer a further insight into shape modelling, since it allows the information about thickness to be decoupled from the rest of the shape. SSMs based on this representation can lead to a di erent perspective on the understanding of femoral anatomy and function,and can also enable the reconstruction of the complete anatomy starting from a reduced set of features, with diverse applications in the elds of surgical planning, forensic science and paleontology

Essential oils in ocular pathology: an experimental study

Introduction: The antimicrobial activity of essential oils (EOs) has been known for ages; in particular, the EOs of Melaleuca alternifolia, Thymus vulgaris, Mentha piperita, and Rosmarinus officinalis have been used for the treatment of fungal and bacterial infections. Methodology: This study focused on the in vitro cytotoxicity to normal human conjunctiva cells and antimicrobial activity of 20 EOs. Results: The oils tested showed no cytotoxic effect at very low concentrations. Rosmarinus officinalis, Melaleuca alternifolia, and Thymus vulgaris L. red thyme geraniol sel oils had good antimicrobial activity against Gram-positive and Gram-negative strains. Conclusions: The results of this study are of great interest and may have a major impact on public health, providing useful tips to optimize the therapeutic use of some natural drugs

NotPlaNET: Removing False Positives from Planet Hunters TESS with Machine Learning

Differentiating between real transit events and false positive signals in photometric time series data is a bottleneck in the identification of transiting exoplanets, particularly long-period planets. This differentiation typically requires visual inspection of a large number of transit-like signals to rule out instrumental and astrophysical false positives that mimic planetary transit signals. We build a one-dimensional convolutional neural network (CNN) to separate eclipsing binaries and other false positives from potential planet candidates, reducing the number of light curves that require human vetting. Our CNN is trained using the TESS light curves that were identified by Planet Hunters citizen scientists as likely containing a transit. We also include the background flux and centroid information. The light curves are visually inspected and labeled by project scientists and are minimally pre-processed, with only normalization and data augmentation taking place before training. The median percentage of contaminants flagged across the test sectors is 18% with a maximum of 37% and a minimum of 10%. Our model keeps 100% of the planets for 16 of the 18 test sectors, while incorrectly flagging one planet candidate (0.3%) for one sector and two (0.6%) for the remaining sector. Our method shows potential to reduce the number of light curves requiring manual vetting by up to a third with minimal misclassification of planet candidates.Comment: Under review at The Astronomical Journa

Immune and Hereditary Thrombotic Thrombocytopenic Purpura: Can ADAMTS13 Deficiency Alone Explain the Different Clinical Phenotypes?

: Thrombotic thrombocytopenic purpura (TTP) is a thrombotic microangiopathy caused by a hereditary or immune-mediated deficiency of the enzyme ADAMTS13 (a disintegrin and metalloproteinase with a thrombospondin type 1 motif, member 13). TTPs are caused by the following pathophysiological mechanisms: (1) the presence of inhibitory autoantibodies against ADAMTS13; and (2) hereditary mutations of the ADAMTS13 gene, which is present on chromosome 9. In both syndromes, TTP results from a severe deficiency of ADAMTS13, which is responsible for the impaired proteolytic processing of high-molecular-weight von Willebrand factor (HMW-VWF) multimers, which avidly interact with platelets and subendothelial collagen and promote tissue and multiorgan ischemia. Although the acute presentation of the occurring symptoms in acquired and hereditary TTPs is similar (microangiopathic hemolytic anemia, thrombocytopenia, and variable ischemic end-organ injury), their intensity, incidence, and precipitating factors are different, although, in both forms, a severe ADAMTS13 deficiency characterizes their physiopathology. This review is aimed at exploring the possible factors responsible for the different clinical and pathological features occurring in hereditary and immune-mediated TTPs

Exploring Lignans, a Class of Health Promoting Compounds, in a Variety of Edible Oils from Brazil

Lignans, a group of polyphenols, have been identified in eight cold pressed oils from fruits, nuts, and seeds, retrieved from the Brazilian market. The oils under investigation were avocado, Brazilian nut, canola, coconut, grapeseed, macadamia, palm, and pequi. Olive oil was selected as a reference oil, since numerous data on its lignan content are available in literature. The qualitative and quantitative profiles were obtained, after extraction, by means of UFLC-ESI-MS/MS analyses. The total lignan content showed a high variability, ranging from 0.69 mg·Kg−1 (pequi) to 7.12 mg·Kg−1 (grapeseed), with the highest content registered for olive oil. Seven lignans were quantified, matairesinol and pinoresinol being the most abundant. The LC-MS/MS method was validated, showing linearity in the range of 12.5–212.5 mg·Kg−1, LOD in the range of 0.18–11.37 mg·Kg−1, and LOQ in the range of 0.53–34.45 mg·Kg−1. Additionally, part of the study was focused on the evaluation of the flavor profile, this being a key element in consumers’ evaluations, by means of HS-SPME-GC. In total, 150 volatile compounds were determined in the eight oils, with identified fractions ranging from 91.85% (avocado) to 96.31% (canola), with an average value of 94.1%. Groups of components contributed characteristically to the flavour of each oil

Fluorescent Light Energy (FLE) Generated through Red LED Light and a Natural Photoconverter Gel as a New, Non-Invasive Approach for Facial Age Control: A Pilot Study

This study, for the first time, evaluated the safety and efficacy of a new natural-based topical gel containing a spirulina extract. This photoconverter gel generates fluorescent light energy (FLE) via a red LED light device, which is proven to be effective for age control of facial skin. This was a one-centre, observational, uncontrolled pilot trial. Eight healthy female subjects aged 35 to 65 years old, with Fitzpatrick skin types II–V were recruited. The duration of the study was five treatment sessions of one treatment every seven days, with a final follow-up at one month after the last treatment session. The images and the related data were acquired with the SONY® Mod. DSCRX10M3, the Canfield VISIA Facial Imaging System®, and QUANTIFICARE 3D® analysis. Patient compliance was excellent (100%) and the treatment was described as warm and pleasant by the patients. After 30 days, VISIA parameters such as wrinkles, texture, red areas, and Trueskin Age® had improved. The safety and efficacy of the FLE treatment assessed in this trial were achieved for overall rejuvenation of facial skin, focusing on wrinkles evaluated via the specific VISIA algorithms

Thymus vulgaris L. essential oils from Emilia Romagna Apennines (Italy): phytochemical composition and antimicrobial activity on food-borne pathogens

Between Modena and Bologna Apennines (Italy), several agricultural farms have recently been dedicated to the cultivation of autochthonous aromatic plants as primary cultivation or to complement other crops. In this study, the chemical composition of Thymus vulgaris L. essential oils (EOs) from this region was evaluated by means of gas-chromatographic analysis. Three different mulching techniques, in particular, soil coverage with grass, mulch with plastic film and with straw were investigated. The results highlighted that mulching techniques influenced the composition of the analysed EOs. All the EOs exerted good antimicrobial activity against clinical and food strains of the pathogen Listeria monocytogenes, with differences related to the composition. The EO obtained from plants covered with grass showed the best results, having MIC ≤ 2.5 μL/mL, and being able to inhibit also antibiotic-resistant strains, thus confirming that soil coverage with grass influences the composition and also the biological activity of Thymus vulgaris EO

Phytochemical Composition and In Vitro Antimicrobial Activity of Essential Oils from the Lamiaceae Family against Streptococcus agalactiae and Candida albicans Biofilms

Abstract: The antimicrobial activity of different essential oils (EOs) from the Lamiaceae family was evaluated on Streptococcus agalactiae, Candida albicans, and lactobacilli. S. agalactiae is the main cause of severe neonatal infections, such as sepsis, meningitis, and pneumonia. C. albicans is a primary causative agent of vulvovaginal candidiasis, a multifactorial infectious disease of the lower female reproductive tract. Lactobacilli represent the dominant bacterial species of the vaginal flora and constitute the natural defense against pathogens. On the basis of the preliminary results, the attention was focused on the EOs from Lavandula x intermedia Emeric ex Loisel. and Mentha arvensis L. By using gas chromatography (GS) retention data and mass spectra, it was possible to identify more than 90% of the total composition of the EO samples. The minimal inhibitory concentration (MIC) and anti-biofilm activity of the two EOs were determined against all isolated strains, using the EOs by themselves or in combination with each other and with drugs (erythromycin and fluconazole). The results showed a good antimicrobial and anti-biofilm activity of both EOs and a synergistic effect, leading to the best results against all the strains, resulted using the combinations EOs/EOs and antimicrobials/EOs