Comparison of injuries to New Zealand rock lobsters (Jasus edwardsii) caused by hand versus snare collection

Following the prohibition in New Zealand of lobster snares in late 2005, we undertook research to compare the frequency and extent of injuries to rock lobsters (Jasus edwardsii) (Hutton) caused by recreational SCUBA divers using lobster snares compared with hand collection. Rock lobsters were sampled between January 2006 and October 2006 from multiple dive sites around the North Island of New Zealand. Of the 124 rock lobsters caught, 20.9% were in a soft shell state. Female rock lobsters constituted 43.5% of the catch, but only one was carrying eggs. Female mean tail width was 72.2 mm; male mean tail width was 71.9 mm. We found that hand collection caused significantly more injuries than snare collection, to both soft shell and hard shell animals. Hand collection also resulted in more major injuries, with 18% of hard shell animals and 31% of soft shell animals losing two or more limbs. We recommend that the prohibition on the use of rock lobster snares be lifted, as their use appears to significantly reduce injury and stress to rock lobsters in recreational dive areas, and increase the survival of undersized individuals released after capture

Contracts in Practice

Contracts are a form of lightweight formal specification embedded in the program text. Being executable parts of the code, they encourage programmers to devote proper attention to specifications, and help maintain consistency between specification and implementation as the program evolves. The present study investigates how contracts are used in the practice of software development. Based on an extensive empirical analysis of 21 contract-equipped Eiffel, C#, and Java projects totaling more than 260 million lines of code over 7700 revisions, it explores, among other questions: 1) which kinds of contract elements (preconditions, postconditions, class invariants) are used more often; 2) how contracts evolve over time; 3) the relationship between implementation changes and contract changes; and 4) the role of inheritance in the process. It has found, among other results, that: the percentage of program elements that include contracts is above 33% for most projects and tends to be stable over time; there is no strong preference for a certain type of contract element; contracts are quite stable compared to implementations; and inheritance does not significantly affect qualitative trends of contract usage

Alternative antibody for the detection of CA19-9 antigen: a European multicenter study for the evaluation of the analytical and clinical performance of the Access (R) GI Monitor assay on the UniCel (R) Dxl 800 Immunoassay System

Background: Gastrointestinal cancer antigen CA19-9 is known as a valuable marker for the management of patients with pancreatic cancer. Methods: The analytical and clinical performance of the Access(R) GI Monitor assay (Beckman Coulter) was evaluated on the UniCel(R) Dxl 800 Immunoassay System at five different European sites and compared with a reference method, defined as CA19-9 on the Elecsys System (Roche Diagnostics). Results: Total imprecision (%CV) of the GI Monitor ranged between 3.4% and 7.7%, and inter-laboratory reproducibility between 3.6% and 4.0%. Linearity upon dilution showed a mean recovery of 97.4% (SD+7.2%). Endogenous interferents had no influence on GI Monitor levels (mean recoveries: hemoglobin 103%, bilirubin 106%, triglycerides 106%). There was no high-dose hook effect up to 115,000 kU/L. Clinical performance investigated in sera from 1811 individuals showed a good correlation between the Access' GI Monitor and Elecsys CA19-9 (R = 0.959, slope = 1.004, intercept +0.17). GI Monitor serum levels were low in healthy individuals (n = 267, median = 6.0 kU/L, 95th percentile = 23.1 kU/L), higher in individuals with various benign diseases (n = 550, medians = 5.8-13.4 kU/L, 95th percentiles = 30.1-195.5 kU/L) and even higher in individuals suffering from various cancers (n = 995, medians = 8.4-233.8 kU/L, 95th percentiles = 53.7-13,902 kU/L). Optimal diagnostic accuracy for cancer detection against the relevant benign control group by the GI Monitor was found for pancreatic cancer {[}area under the curve (AUC) 0.83]. Results for the reference CA19-9 assay were comparable (AUC 0.85). Conclusions: The Access(R) GI Monitor provides very good methodological characteristics and demonstrates an excellent analytical and clinical correlation with the Elecsys CA19-9. The GI Monitor shows the best diagnostic accuracy in pancreatic cancer. Our results also suggest a clinical value of the GI Monitor in other cancers

Removal of invasive fish and exclusion of koi carp from Lake Ohinewai

The lower Waikato River floodplain contains many shallow lakes. The floodplain has been highly developed for pastoral agriculture, primarily dairy farming, resulting in extensive drainage and flood control measures to regulate river and lake levels. Most lakes have degraded water quality as a result of nutrient and sediment enrichment, and the additional impacts of pest fish such as koi carp, goldfish, catfish and rudd have generally contribute9 to the total collapse of submerged macrophytes and progression to a highly eutrophic state. Of all New Zealand lakes monitored regularly for water quality, around 25% of those categorised as supertrophic or hypertrophic are on the Waikato River floodplain (Verburg et al. 2010). Lake Ohinewai is a shallow (4.5 m depth), 16.8 ha lake on the floodplain. The lake has a 331 ha catchment that is primarily flat and dominated by intensive pastoral farming with several inlet drains. A single outlet drain leads to Lake Waikare via Lake Rotokawau and passes through a circular road culvert 930 m from the lake outlet. Lake Ohinewai deteriorated from a stable oligotrophic (macrophyte-dominated) state to a stable eutrophic (algal-dominated) state during the early 1990s, and now lacks aquatic macrophytes. In 1981, 80% of the lake was covered in aquatic macrophytes but by 1991 none remained (Edwards et al. 2005). Invasion by koi carp over this period was implicated in this change of state

Aldehyde dehydrogenase 1A1 and gelsolin identified as novel invasion-modulating factors in conditioned medium of pancreatic cancer cells

Conditioned medium (CM) from clonal sub-populations of the pancreatic cancer cell line, MiaPaCa-2 with differing invasive abilities, were examined for their effect on in vitro invasion. Conditioned medium from Clone #3 (CM#3) strongly promoted invasion, while CM from Clone #8 (CM#8) inhibited invasion in vitro. 2D DIGE followed by MALDI-TOF MS analysis of CM#3 and CM#8 identified 41 proteins which were differentially regulated; 27 proteins were down-regulated and 14 proteins up-regulated in the invasion-promoting CM#3 when compared to CM#8. Western blotting analysis confirmed the down-regulated expression of gelsolin and the up-regulation of aldehyde dehydrogenase 1A1 in CM#3. Down-regulation of aldehyde dehydrogenase 1A1 in Clone #3 CM and gelsolin levels in Clone #8 CM by siRNA transfection revealed an important involvement of these proteins in promoting and inhibiting invasion in these pancreatic cancer cell lines

A Randomized, Double-Blinded, Phase II Trial of Gemcitabine and Nab-Paclitaxel Plus Apatorsen or Placebo in Patients with Metastatic Pancreatic Cancer: The RAINIER Trial.

Lessons learnedThe addition of the heat shock protein 27 (Hsp27)-targeting antisense oligonucleotide, apatorsen, to a standard first-line chemotherapy regimen did not result in improved survival in unselected patients with metastatic pancreatic cancer.Findings from this trial hint at the possible prognostic and predictive value of serum Hsp27 that may warrant further investigation.BackgroundThis randomized, double-blinded, phase II trial evaluated the efficacy of gemcitabine/nab-paclitaxel plus either apatorsen, an antisense oligonucleotide targeting heat shock protein 27 (Hsp27) mRNA, or placebo in patients with metastatic pancreatic cancer.MethodsPatients were randomized 1:1 to Arm A (gemcitabine/nab-paclitaxel plus apatorsen) or Arm B (gemcitabine/nab-paclitaxel plus placebo). Treatment was administered in 28-day cycles, with restaging every 2 cycles, until progression or intolerable toxicity. Serum Hsp27 levels were analyzed at baseline and on treatment. The primary endpoint was overall survival (OS).ResultsOne hundred thirty-two patients were enrolled, 66 per arm. Cytopenias and fatigue were the most frequent grade 3/4 treatment-related adverse events for both arms. Median progression-free survival (PFS) and OS were 2.7 and 5.3 months, respectively, for arm A, and 3.8 and 6.9 months, respectively, for arm B. Objective response rate was 18% for both arms. Patients with high serum level of Hsp27 represented a poor-prognosis subgroup who may have derived modest benefit from addition of apatorsen.ConclusionAddition of apatorsen to chemotherapy does not improve outcomes in unselected patients with metastatic pancreatic cancer in the first-line setting, although a trend toward prolonged PFS and OS in patients with high baseline serum Hsp27 suggests this therapy may warrant further evaluation in this subgroup

Abundance and Function of Multiple Haemoglobin Isomorphs from Rainbow Trout (Oncorhynchus mykiss)

Haemoglobins perform the vital physiological function of transporting oxygen from the external environment to the tissues. Poikilothermic rainbow trout (Oncorhynchus mykiss = Salmo gairdneri = S. irideus) produce multiple forms of haemoglobin that respond differently to varying environmental and physiological conditions. However, the timescale and physiology of these changes are not known. Changes in isomorph abundance may potentially originate from the production of new isomorphs in already circulating erythrocytes. Alternatively, new isomorphs may be produced through the reassembly of extant haemoglobin subunits. The final hypothesis is that changes in isomorph abundance occur through the production of new erythrocytes with red blood cells ‘pre-programmed’ to produce a particular set of haemoglobins. Changes originating from production of new erythrocytes would require longer periods of time before being detectable; weeks to months depending on the temperature regime. To test this, paired groups of rainbow trout were subjected to either 10ºC or 20ºC for 5, 7, 14, 21 and 28 days. A total of 14 isomorphs were observed after the haemolysate was separated using cellulose acetate electrophoresis. However, no detectable differences in isomorph abundance were found between treatment groups. In a follow-up experiment, anaemia was induced in rainbow trout to stimulate the production of new erythrocytes. The trout were then held at either 10ºC or 20ºC for 21 days. This resulted in relative increases in the abundance of anodal haemoglobin isomorphs in the 20ºC acclimated group and a corresponding decrease in cathodal haemoglobin isomorphs. To further confirm that changes in abundance were occurring through the production of new erythrocytes, separation of erythrocytes into age classes was undertaken to compare the isomorphs present in mature erythrocytes with those from erythrocytes produced under amended temperature regimes. Using Percoll density gradients, red blood cells from anaemia-induced trout acclimated to either 10ºC or 20ºC were enriched into mature and young erythrocyte fractions. Further significant differences in abundance were found between both anodal and cathodal isomorphs when compared between treatment groups. From these results it was concluded that changes in haemoglobin isomorph abundance originated from the production of new erythrocytes. Cellulose acetate gel electrophoresis was carried out on seven haemoglobin fractions that had undergone prior separation from whole haemolysate by Fast Protein Liquid Chromatography. Each haemoglobin fraction was found to be composed of two isomorphs for a total of 14 haemoglobin isomorphs. The oxygen binding properties of each fraction was examined under varying conditions of temperature, pH, ATP and chloride concentrations. Cathodal functional groups HbI to HbIII were found to be insensitive to temperature, pH, chloride and the organic phosphate ATP. In contrast, the anodal fractions (HbIV to HbVII) all responded to pH and temperature changes, while HbVI and HbVII responded to ATP. However, no fraction responded to increased chloride concentrations. These results suggest that different varieties of rainbow trout may produce different forms of haemoglobin as part of an adaptive response to local environmental conditions, leading to variation in the functional properties of some of the less abundant functional groups such as HbIII. Despite the theory that cathodal haemoglobins function as emergency back-up supplies of oxygen being proposed more than thirty years ago, no published information can be found for it being tested in the laboratory. Two groups of anaemia-induced rainbow trout were placed in a divided annular flume for 24 days. The high activity group was subjected to a forced swimming speed of 2.5 body lengths (B.L.) s-1 for 6 h d-1. When not undergoing forced exercise the treatment group were maintained at the same speed as the low activity group of 0.5 B.L. s-1. Significant differences in haemoglobin isomorph abundance were present between the initial samples taken at the time of anaemia induction and high and low activity groups. However, only the C4 isomorph demonstrated a significant difference between high and low activity groups. When total anodal and cathodal isomorphs were compared between initial state, high activity and low activity groups, no differences were present. These data suggest that the induction of anaemia had an effect on the composition of the isomorphs but no physiological effect on oxygen delivery. In addition, the swimming velocity of 2.5 B.L. s-1 employed for the high activity group may have been an insufficient stimulus to induce changes in isomorph abundance. It is concluded that changes in haemoglobin isomorph abundance occur in response to chronic changes in the environment. Increases in the abundance of anodal isoforms in response to increasing temperature allows for increased delivery of oxygen to tissues undergoing increases in metabolic activity associated with higher temperatures. The multiple haemoglobin isomorphs of rainbow trout provide an increased efficiency in delivery of oxygen to tissues under varying metabolic conditions of pH, temperature and oxygen saturation. The cathodal and anodal haemoglobin functional groups of rainbow trout exhibit different oxygen affinities in response to temperature, pH and ATP concentration but not to physiologically realistic chloride concentrations. The oxygen binding properties of the isomorphs within the cathodal and anodal functional groups are broadly similar. However, differences in responses by the anodal functional groups to NTPs may exist. An examination of the hypothesis that cathodal haemoglobins act as reserve oxygen delivery sources under prolonged activity produced no significant results. However, this hypothesis still remains viable and needs to be tested under different experimental conditions. This work provides a basis for further research into the adaptive abilities of rainbow trout. The selection of rainbow trout which better adapt to wide ranges of environmental conditions would allow for targeted introduction by fisheries managers to aquatic systems previously not considered optimal for trout growth thereby expanding the fishery

Prognostic and therapeutic significance of carbohydrate antigen 19-9 as tumor marker in patients with pancreatic cancer

In pancreatic cancer ( PC) accurate determination of treatment response by imaging often remains difficult. Various efforts have been undertaken to investigate new factors which may serve as more appropriate surrogate parameters of treatment efficacy. This review focuses on the role of carbohydrate antigen 19- 9 ( CA 19- 9) as a prognostic tumor marker in PC and summarizes its contribution to monitoring treatment efficacy. We undertook a Medline/ PubMed literature search to identify relevant trials that had analyzed the prognostic impact of CA 19- 9 in patients treated with surgery, chemoradiotherapy and chemotherapy for PC. Additionally, relevant abstract publications from scientific meetings were included. In advanced PC, pretreatment CA 19- 9 levels have a prognostic impact regarding overall survival. Also a CA 19- 9 decline under chemotherapy can provide prognostic information for median survival. A 20% reduction of CA 19- 9 baseline levels within the first 8 weeks of chemotherapy appears to be sufficient to define a prognostic relevant subgroup of patients ('CA 19- 9 responder'). It still remains to be defined whether the CA 19- 9 response is a more reliable method for evaluating treatment efficacy compared to conventional imaging. Copyright (c) 2006 S. Karger AG, Basel

A multi-gene signature predicts outcome in patients with pancreatic ductal adenocarcinoma.

© 2014 Haider et al.; licensee BioMed Central. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.Improved usage of the repertoires of pancreatic ductal adenocarcinoma (PDAC) profiles is crucially needed to guide the development of predictive and prognostic tools that could inform the selection of treatment options