The R Journal (July 2018) 10(1): Complete Issue

Editorial, John Verzani Contributed Research Articles A System for an Accountable Data Analysis Process in R, Jonathan Gelfond, Martin Goros, Brian Hernandez and Alex Bokov RealVAMS: An R Package for Fitting a Multivariate Value-added Model (VAM), Jennifer Broatch, Jennifer Green, and Andrew Karl InfoTrad: An R Package for Estimating the Probability of Informed Trading, Duygu Çelik and Murat Tiniç RatingScaleReduction Package: Stepwise Rating Scale Item Reduction without Predictability Loss, Waldemar W. Koczkodaj, Feng Li, and Alicja Wolny-Dominiak mmpf: Monte-Carlo Methods for Prediction Functions, Zachary M. Jones Generalized Additive Model Multiple Imputation by Chained Equations with Package ImputeRobust, Daniel Salfran and Martin Spiess MGLM: An R Package for Multivariate Categorical Data Analysis, Juhyun Kim, Yiwen Zhang, Joshua Day, and Hua Zhou ArCo: An R package to Estimate Artificial Counterfactuals, Yuri R. Fonseca, Ricardo P. Masini, Marcelo C. Medeiros, and Gabriel F. R. Vasconcelos PanJen: An R package for Ranking Transformations in a Linear Regression, Cathrine Ulla Jensen and Toke Emil Panduro Tackling Uncertainties of Species Distribution Model Projections with Package mopa, M. Iturbide, J. Bedia and J.M. Gutiérrez FHDI: An R Package for Fractional Hot Deck Imputation, Jongho Im, In Ho Cho, and Jae Kwang Kim Bayesian Testing, Variable Selection and Model Averaging in Linear Models using R with BayesVarSel, Gonzalo Garcia-Donato and Anabel Forte onewaytests: An R Package for One-Way Tests in Independent Groups Designs, Osman Dag, Anil Dolgun, and Naime Meric Konar Inventorymodel: An R Package for Centralized Inventory Problems, Alejandro Saavedra-Nieves R Package imputeTestbench to Compare Imputation Methods for Univariate Time Series, Marcus W. Beck, Neeraj Bokde, Gualberto Asencio-Cortés, and Kishore Kulat ICSOutlier: Unsupervised Outlier Detection for Low-Dimensional Contamination Structure, Aurore Archimbaud, Klaus Nordhausen, and Anne Ruiz-Gazen rpostgis: Linking R with a PostGIS Spatial Database, David Bucklin and Mathieu Basille lba: An R Package for Latent Budget Analysis, Enio G. Jelihovschi and Ivan Bezerra Allaman Semiparametric Generalized Linear Models with the gldrm Package, Michael J. Wurm and Paul J. Rathouz LP Algorithms for Portfolio Optimization: The PortfolioOptim Package, Andrzej Palczewski Welfare, Inequality and Poverty Analysis with rtip: An Approach Based on Stochastic Dominance, Angel Berihuete, Carmen D. Ramos, and Miguel A. Sordo dimRed and coRanking: Unifying Dimensionality Reduction in R, Guido Kraemer, Markus Reichstein, and Miguel D. Mahecha GrpString: An R Package for Analysis of Groups of Strings, Hui Tang, Elizabeth L. Day, Molly B. Atkinson, and Norbert J. Pienta Epistemic Game Theory: Putting Algorithms to Work, Bilge Başer and Nalan Cinemre Residuals and Diagnostics for Binary and Ordinal Regression Models: An Introduction to the sure Package, Brandon M. Greenwell, Andrew J. McCarthy, Bradley C. Boehmke, and Dungang Liu Advanced Bayesian Multilevel Modeling with the R Package brms, Paul-Christian Bürkner Support Vector Machines for Survival Analysis with R, Césaire J. K. Fouodo, Inke R. König, Claus Weihs, Andreas Ziegler, and Marvin N. Wright Nonparametric Independence Tests and k-sample Tests for Large Sample Sizes Using Package HHG, Barak Brill, Yair Heller, and Ruth Heller Simple Features for R: Standardized Support for Spatial Vector Data, Edzer Pebesma Pstat: An R Package to Assess Population Differentiation in Phenotypic Traits, Stéphane Blondeau Da Silva and Anne Da Silva Collections in R: Review and Proposal, Timothy Barry Approximating the Sum of Independent Non-Identical Binomial Random Variables, Boxiang Liu and Thomas Quertermous cchs: An R Package for Stratified Case-Cohort Studies, Edmund Jones Small Area Disease Risk Estimation and Visualization Using R, Paula Moraga SetMethods: An Add-on R Package for Advanced QCA, Ioana-Elena Oana and Carsten Q. Schneider HRM: An R Package for Analysing High-dimensional Multi-factor Repeated Measures, Martin Happ, Solomon W. Harrar and Arne C. Bathke News and Notes Conference Report: eRum 2018, Gergely Daróczi R Day Report, Fernando P. Mayer, Walmes M. Zeviani, Wagner H. Bonat, Elias T. Krainski, and Paulo J. Ribeiro, Jr. R Foundation News, Torsten Hothorn Changes on CRAN, Kurt Hornik, Uwe Ligges and Achim Zeileis News from the Bioconductor Project, Bioconductor Core Team Changes in R, R Core Tea

The R Journal (June 2021) 13(1): Complete Issue

Editorial, Dianne Cook Contributed Research Articles SEEDCCA: An Integrated R-Package for Canonical Correlation Analysis and Partial Least Squares, Bo-Young Kim, Yunju Im, and Jae Keun Yoo npcure: An R Package for Nonparametric Inference in Mixture Cure Models, Ana López-Cheda, M. Amalia Jácome, and Ignacio López-de-Ullibarri A Method for Deriving Information from Running R Code, Mark P. J. van der Loo JMcmprsk: An R Package for Joint Modelling of Longitudinal and Survival Data with Competing Risks, Hong Wang, Ning Li, Shanpeng Li, and Gang Li Wide-to-tall Data Reshaping Using Regular Expressions and the nc Package, Toby Dylan Hocking Linear Regression with Stationary Errors: The R Package slm, Emmanuel Caron, Jérôme Dedecker and Bertrand Michel exPrior: An R Package for the Formulation of Ex-Situ Priors, Falk Heße, Karina Cucchi, Nura Kawa, and Yoram Rubin penPHcure: Variable Selection in Proportional Hazards Cure Model with Time-Varying Covariates, Alessandro Beretta and Cédric Heuchenne The bdpar Package: Big Data Pipelining Architecture for R, Miguel Ferreiro-Díaz, Tomás R. Cotos-Yáñez, José R. Méndez, and David Ruano-Ordás Unidimensional and Multidimensional Methods for Recurrence Quantification Analysis with crqa, Moreno I. Coco, Dan Mønster, Giuseppe Leonardi, Rick Dale, and Sebastian Wallot clustcurv: An R Package for Determining Groups in Multiple Curves, Nora M. Villanueva, Marta Sestelo, Luis Meira-Machado, and Javier Roca-Pardiñas Benchmarking R packages for Calculation of Persistent Homology, Eashwar V. Somasundaram, Shael E. Brown, Adam Litzler, Jacob G. Scott, and Raoul R. Wadhwa Statistical Quality Control with the qcr Package, Miguel Flores, Rubén Fernández-Casal, Salvador Naya, and Javier Tarrío-Saavedra pdynmc: A Package for Estimating Linear Dynamic Panel Data Models Based on Nonlinear Moment Conditions, Markus Fritsch, Andrew Adrian Yu Pua, and Joachim Schnurbus DChaos: An R Package for Chaotic Time Series Analysis, Julio E. Sandubete and Lorenzo Escot IndexNumber: An R Package for Measuring the Evolution of Magnitudes, Alejandro Saavedra-Nieves and Paula Saavedra-Nieves garchx: Flexible and Robust GARCH-X Modeling, Genaro Sucarrat ROBustness In Network (robin): An R Package for Comparison and Validation of Communities, Valeria Policastro, Dario Righelli, Annamaria Carissimo, Luisa Cutillo, and Italia De Feis Finding Optimal Normalizing Transformations via bestNormalize, Ryan A. Peterson Package wsbackfit for Smooth Backfitting Estimation of Generalized Structured Models, Javier Roca-Pardiñas, María Xosé Rodríguez-Álvarez, and Stefan Sperlich RLumCarlo: Simulating Cold Light using Monte Carlo Methods, Sebastian Kreutzer, Johannes Friedrich, Vasilis Pagonis, Christian Laag, Ena Rajovic, and Christoph Schmidt OneStep: Le Cam\u27s One-step Estimation Procedure, Alexandre Brouste, Christophe Dutang, and Darel Noutsa Mieniedou The HBV.IANIGLA Hydrological Model, Ezequiel Toum, Mariano H. Masiokas, Ricardo Villalba, Pierre Pitte, and Lucas Ruiz The R Package smicd: Statistical Methods for Interval-Censored Data, Paul Walter krippendorffsalpha: An R Package for Measuring Agreement Using Krippendorff\u27s Alpha Coefficient, John Hughes Working with CRSP/COMPUSTAT in R: Reproducible Empirical Asset Pricing, Majeed Simaan distr6: R6 Object-Oriented Probability Distributions Interface in R, Raphael Sonabend and Franz J. Király gofCopula: Goodness-of-Fit Tests for Copulae, Ostap Okhrin, Simon Trimborn, and Martin Waltz Analyzing Dependence between Point Processes in Time Using IndTestPP, Ana C. Cebrián and Jesús Asín Conversations in Time: Interactive Visualization to Explore Structured Temporal Data, Earo Wang and Dianne Cook ROCnReg: An R Package for Receiver Operating Characteristic Curve Inference with and without Covariates, María Xosé Rodríguez-Álvarez and Vanda Inácio Automating Reproducible, Collaborative Clinical Trial Document Generation with the listdown Package, Michael Kane, Xun Jiang, and Simon Urbanek Towards a Grammar for Processing Clinical Trial Data, Michael J. Kane Reproducible Summary Tables with the gtsummary Package, Daniel D. Sjoberg, Karissa Whiting, Michael Curry, Jessica A. Lavery, and Joseph Larmarange Regularized Transformation Models: The tramnet Package, Lucas Kook and Torsten Hothorn BayesSPsurv: An R Package to Estimate Bayesian (Spatial) Split-Population Survival Models Brandon Bolte, Nicolás Schmidt, Sergio Béjar, Nguyen Huynh, and Bumba Mukherjee stratamatch: Prognostic Score Stratification Using a Pilot Design, Rachael C. Aikens, Joseph Rigdon, Justin Lee, Michael Baiocchi, Andrew B. Goldstone, Peter Chiu, Y. Joseph Woo, and Jonathan H. Chen News and Notes Changes in R 4.0–4.1, Tomas Kalibera, Sebastian Meyer, and Kurt Hornik Changes on CRAN, Kurt Hornik, Uwe Ligges, and Achim Zeileis News from the Bioconductor Project, Bioconductor Core Team R Foundation News, Torsten Hothorn News from the Forwards Taskforce, Heather Turner R Medicine 2020: The Power of Going Virtual, Elizabeth J. Atkinson, Peter D. Higgins, Denise Esserman, Michael J. Kane, and Steven J. Schwager Conference Report of Why R? Turkey 2021, Mustafa Cavus, Olgun Aydin, Ozan Evkaya, Ozancan Ozdemir, Deniz Bezer, and Ugur Da

The R Journal (December 2009) 1(2): Complete Issue

Contributed Research Articles Aspects of the Social Organization and Trajectory of the R Project, John Fox Party on! Carolin Strobl, Torsten Hothorn and Achim Zeileis ConvergenceConcepts: An R Package to Investigate Various Modes of Convergence, Pierre Lafaye de Micheaux and Benoit Liquet asympTest: A Simple R Package for Classical Parametric Statistical Tests and Confidence Intervals in Large Samples, J.-F. Coeurjolly, R. Drouilhet, P. Lafaye de Micheaux and J.-F. Robineau copas: An R package for Fitting the Copas Selection Model, J. Carpenter, G. Rücker and G. Schwarzer Transitioning to R: Replicating SAS, Stata, and SUDAAN Analysis Techniques in Health Policy Data, Anthony Damico Rattle: A Data Mining GUI for R, Graham J Williams sos: Searching Help Pages of R Packages, Spencer Graves, Sundar Dorai-Raj and Romain François From the Core The New R Help System Duncan Murdoch and Simon Urbanek News and Notes Conference Review: DSC 2009 Conference Review: WZUR(2.0): The Second Meeting of Polish R Users R Changes: 2.9.1-2.10.0 Patched Changes on CRAN News from the Bioconductor Project R Foundation New

The R Journal (June 2012) 4(1): Complete Issue

Contributed Research Articles Analysing Seasonal Data, Adrian G. Barnett, Peter Baker, and Annette J. Dobson MARSS: Multivariate Autoregressive State-space Models for Analyzing Time-series Data, Elizabeth E. Holmes, Eric J. Ward, and Kellie Wills openair: Data Analysis Tools for the Air Quality Community, Karl Ropkins and David C. Carslaw Foreign Library Interface, Daniel Adler Vdgraph: A Package for Creating Variance Dispersion Graphs, John Lawson xgrid and R: Parallel Distributed Processing Using Heterogeneous Groups of Apple Computers, Sarah C. Anoke, Yuting Zhao, Rafael Jaeger, and Nicholas J. Horton maxent: An R Package for Low-memory Multinomial Logistic Regression with Support for Semi-automated Text Classification, Timothy P. Jurka Sumo: An Authenticating Web Application with an Embedded R Session, Timothy T. Bergsma and Michael S. Smith Who Did What? The Roles of R Package Authors and How to Refer to Them, Kurt Hornik, Duncan Murdoch, and Achim Zeileis News and Notes Changes in R 70 Changes on CRAN 80 R Foundation News 9

The R Journal (June 2010) 2(1): Complete Issue

Contributed Research Articles IsoGene: An R Package for Analyzing Dose-response Studies in Microarray Experiments, Setia Pramana, Dan Lin, Philippe Haldermans, Ziv Shkedy, Tobias Verbeke, Hinrich Göhlmann, An De Bondt, Willem Talloen, and Luc Bijnens MCMC for Generalized Linear Mixed Models with glmmBUGS, Patrick Brown and Lutong Zhou Mapping and Measuring Country Shapes, Nils B. Weidmann and Kristian Skrede Gleditsch tmvtnorm: A Package for the Truncated Multivariate Normal Distribution, Stefan Wilhelm and B. G. Manjunath neuralnet: Training of Neural Networks, Frauke Günther and Stefan Fritsch glmperm: A Permutation of Regressor Residuals Test for Inference in Generalized Linear Models, Wiebke Werft and Axel Benner Online Reproducible Research: An Application to Multivariate Analysis of Bacterial DNA Fingerprint Data, Jean Thioulouse, Claire Valiente-Moro, and Lionel Zenner Two-sided Exact Tests and Matching Confidence Intervals for Discrete Data, Michael P. Fay News and Notes A Beginner\u27s Guide to R Conference Review: The 2nd Chinese R Conference Introducing NppToR: R Interaction for Notepad++ Changes in R 2.10.1-2.11.1 Changes on CRAN News from the Bioconductor Project R Foundation New

The R Journal (December 2015) 7(2): Complete Issue

Editorial, Bettina Grün Contributed Research Articles Fitting Conditional and Simultaneous Autoregressive Spatial Models in hglm, Moudud Alam, Lars Rönnegård, and Xia Shen VSURF: An R Package for Variable Selection Using Random Forests, Robin Genuer, Jean-Michel Poggi, and Christine Tuleau-Malot zoib: An R Package for Bayesian Inference for Beta Regression and Zero/One Inflated Beta Regression, Fang Liu, and Yunchuan Kong apc: An R Package for Age-Period-Cohort Analysis, Bent Nielsen QuantifQuantile: An R Package for Performing Quantile Regression Through Optimal Quantization, Isabelle Charlier, Davy Paindaveine, and Jérôme Saracco Numerical Evaluation of the Gauss Hypergeometric Function with the hypergeo Package, Robin K. S. Hankin SRCS: Statistical Ranking Color Scheme for Visualizing Parameterized Multiple Pairwise Comparisons with R, Pablo J. Villacorta and José A. Sáez An R Package for the Panel Approach Method for Program Evaluation: pampe, Ainhoa Vega-Bayo BSGS: Bayesian Sparse Group Selection, Kuo-Jung Lee and Ray-Bing Chen ClustVarLV: An R Package for the Clustering of Variables Around Latent Variables, Evelyne Vigneau, Mingkun Chen, and El Mostafa Qannari Working with Multilabel Datasets in R: The mldr Package, Francisco Charte and David Charte PracTools: Computations for Design of Finite Population Samples, Richard Valliant, Jill A. Dever, and Frauke Kreuter ALTopt: An R Package for Optimal Experimental Design of Accelerated Life Testing, Kangwon Seo and Rong Pan abctools: An R Package for Tuning Approximate Bayesian Computation Analyses, Matthew A. Nunes and Dennis Prangle mtk: A General-Purpose and Extensible R Environment for Uncertainty and Sensitivity Analyses of Numerical Experiments, Juhui Wang, Robert Faivre, Hervé Richard, and Hervé Monod treeClust: An R Package for Tree-Based Clustering Dissimilarities, Samuel E. Buttrey and Lyn R. Whitaker mmpp: A Package for Calculating Similarity and Distance Metrics for Simple and Marked Temporal Point Processes, Hideitsu Hino, Ken Takano, and Noboru Murata Open-Channel Computation with R, Michael C. Koohafkan and Bassam A. Younis Generalized Hermite Distribution Modelling with the R Package hermite, David Moriña, Manuel Higueras, Pedro Puig, and María Oliveira Code Profiling in R: A Review of Existing Methods and an Introduction to Package GUIProfiler, Angel Rubio and Fernando de Villar News and Notes The R Consortium and the R Foundation, Martyn Plummer Conference Report: useR! 2015, Torben Tvedebrink News from the Bioconductor Project, The Bioconductor Team Changes in R, The R Core Team Changes on CRAN, Kurt Hornik and Achim Zeilei

The R Journal (June 2020) 12(1): Complete Issue

Editorial, Michael J. Kane Contributed Research Articles gk: An R Package for the g-and-k and Generalised g-and-h Distributions, Dennis Prangle NlinTS: An R Package for Causality Detection in Time Series, Youssef Hmamouche Mapping Smoothed Spatial Effect Estimates from Individual-Level Data: MapGAM, Lu Bai, Daniel L. Gillen, Scott M. Bartell, and Verónica M. Vieira mudfold: An R Package for Nonparametric IRT Modelling of Unfolding Processes, Spyros E. Balafas, Wim P. Krijnen, Wendy J. Post, and Ernst C. Wit tsmp: An R Package for Time Series with Matrix Profile, Francisco Bischoff and Pedro Pereira Rodrigues Individual-Level Modelling of Infectious Disease Data: EpiILM, Vineetha Warriyar K. V., Waleed Almutiry, and Rob Deardon SurvBoost: An R Package for High-Dimensional Variable Selection in the Stratified Proportional Hazards Model via Gradient Boosting, Emily Morris, Kevin He, Yanming Li, Yi Li, and Jian Kang CoxPhLb: An R Package for Analyzing Length Biased Data under Cox Model, Chi Hyun Lee, Heng Zhou, Jing Ning, Diane D. Liu, and Yu Shen SortedEffects: Sorted Causal Effects in R, Shuowen Chen, Victor Chernozhukov, Iván Fernández-Val, and Ye Luo npordtests: An R Package of Nonparametric Tests for Equality of Location Against Ordered Alternatives, Bulent Altunkaynak and Hamza Gamgam lspartition: Partitioning-Based Least Squares Regression, Matias D. Cattaneo, Max H. Farrell, and Yingjie Feng Skew-t Expected Information Matrix Evaluation and Use for Standard Error Calculations, R. Douglas Martin, Chindhanai Uthaisaad, and Daniel Z. Xia rcosmo: R Package for Analysis of Spherical, HEALPix and Cosmological Data, Daniel Fryer, Ming Li, and Andriy Olenko Tools for Analyzing R Code the Tidy Way, Lucy D’Agostino McGowan, Sean Kross, and Jeffrey Leek spinifex: An R Package for Creating a Manual Tour of Low-dimensional Projections of Multivariate Data, Nicholas Spyrison and Dianne Cook ari: The Automated R Instructor, Sean Kross, Jeffrey T. Leek, and John Muschelli CopulaCenR: Copula based Regression Models for Bivariate Censored Data in R, Tao Sun and Ying Ding mistr: A Computational Framework for Mixture and Composite Distributions, Lukas Sablica and Kurt Hornik difNLR: Generalized Logistic Regression Models for DIF and DDF Detection, Adéla Hladká and Patrícia Martinková BayesMallows: An R Package for the Bayesian Mallows Model, Øystein Sørensen, Marta Crispino, Qinghua Liu, and Valeria Vitelli Variable Importance Plots: An Introduction to the vip Package, Brandon M. Greenwell and Bradley C. Boehmke SimilaR: R Code Clone and Plagiarism Detection, Maciej Bartoszuk and Marek Gagolewski Linear Fractional Stable Motion with the rlfsm R Package, Stepan Mazur and Dmitry Otryakhin The R package NonProbEst for estimation in non-probability surveys, M. Rueda, R. Ferri-García, and L. Castro ProjectManagement: An R Package for Managing Projects, Juan Carlos Gonçalves-Dosantos, Ignacio García-Jurado, and Julián Costa The Rockerverse: Packages and Applications for Containerisation with R, Daniel Nüst, Dirk Eddelbuettel, Dom Bennett, Robrecht Cannoodt, Dav Clark, Gergely Daróczi, Mark Edmondson, Colin Fay, Ellis Hughes, Lars Kjeldgaard, Sean Lopp, Ben Marwick, Heather Nolis, Jacqueline Nolis, Hong Ooi, Karthik Ram, Noam Ross, Lori Shepherd, Péter Sólymos, Tyson Lee Swetnam, Nitesh Turaga, Charlotte Van Petegem, Jason Williams, Craig Willis, and Nan Xiao Special Articles S, R, and Data Science, John M. Chambers Provenance of R’s Gradient Optimizers, John C. Nash News and Notes Conference Report: Why R? 2019, Michał Burdukiewicz, Filip Pietluch, Jarosław Chilimoniuk, Katarzyna Sidorczuk, Dominik Rafacz, Leon Eyrich Jessen, Stefan Rödiger, Marcin Kosiński, and Piotr Wójcik Changes on CRAN, Kurt Hornik, Uwe Ligges and Achim Zeileis R Foundation News, Torsten Hothor

The R Journal (June 2019) 11(1): Complete Issue

Editorial, Michael J. Kane Contributed Research Articles atable: Create Tables for Clinical Trial Reports, Armin Ströbel Connecting R with D3 for Dynamic Graphics, to Explore Multivariate Data with Tours, Michael Kipp, Ursula Laa, and Dianne Cook Optimization Routines for Enforcing One-to-One Matches in Record Linkage Problems, Diego Moretti, Luca Valentino, and Tiziana Tuoto mixedsde: A Package to Fit Mixed Stochastic Differential Equations, Charlotte Dion, Simone Hermann, and Adeline Samson Indoor Positioning and Fingerprinting: The R Package ipft, Emilio Sansano, Raúl Montoliu, Óscar Belmonte, and Joaquín Torres-Sospedra RobustGaSP: Robust Gaussian Stochastic Process Emulation in R, Mengyang Gu, Jesus Palomo, and James O. Berger Whats for dynr: A Package for Linear and Nonlinear Dynamic Modeling in R, Lu Ou, Michael D. Hunter, and Sy-Miin Chow Identifying and Testing Recursive vs. Interdependent Links in Simultaneous Equation Models via the SIRE Package, Gianmarco Vacca and Maria Grazia Zoia fclust: An R Package for Fuzzy Clustering, Maria Brigida Ferraro, Paolo Giordani, and Alessio Serafini Matching with Clustered Data: The CMatching Package in R, Massimo Cannas and Bruno Arpino MDFS: MultiDimensional Feature Selection in R, Radosław Piliszek, Krzysztof Mnich, Szymon Migacz, Paweł Tabaszewski, Andrzej Sułecki, Aneta Polewko-Klim, and Witold Rudnicki Nowcasting: An R Package for Predicting Economic Variables Using Dynamic Factor Models, Serge de Valk, Daiane de Mattos, and Pedro Ferreira SimCorrMix: Simulation of Correlated Data with Multiple Variable Types Including Continuous and Count Mixture Distributions, Allison Fialkowski and Hemant Tiwari Time-Series Clustering in R Using the dtwclust Package, Alexis Sardá-Espinosa shadow: R Package for Geometric Shadow Calculations in an Urban Environment, Michael Dorman, Evyatar Erell, Adi Vulkan, and Itai Kloog Integration of Networks and Pathways with StarBioTrek Package, Claudia Cava and Isabella Castiglioni ciuupi: An R package for Computing Confidence Intervals that Utilize Uncertain Prior Information, Rheanna Mainzer and Paul Kabaila ipwErrorY: An R Package for Estimation of Average Treatment Effect with Misclassified Binary Outcome, Di Shu and Grace Y. Yi optimParallel: An R Package Providing a Parallel Version of the L-BFGS-B Optimization Method, Florian Gerber and Reinhard Furrer swgee: An R Package for Analyzing Longitudinal Data with Response Missingness and Covariate Measurement Error, Juan Xiong and Grace Y. Yi BINCOR: An R package for Estimating the Correlation between Two Unevenly Spaced Time Series, Josue M. Polanco-Martinez, Martin A. Medina-Elizalde, Maria Fernanda Sanchez Goni, and Manfred Mudelsee Fixed Point Acceleration in R, Stuart Baumann and Margaryta Klymak SemiCompRisks: An R Package for the Analysis of Independent and Cluster-correlated Semi-competing Risks Data, Danilo Alvares, Sebastien Haneuse, Catherine Lee, and Kyu Ha Lee RSSampling: A Pioneering Package for Ranked Set Sampling, Busra Sevinc, Bekir Cetintav, Melek Esemen, and Selma Gurler unival: An FA-based R Package for Assessing Essential Unidimensionality Using External Validity Information, Pere J. Ferrando, Urbano Lorenzo-Seva, and David Navarro-Gonzalez News and Notes R Foundation News, Torsten Hothorn Changes on CRAN, Kurt Hornik, Uwe Ligges and Achim Zeileis R News, R Core Tea

The R Journal (December 2010) 2(2): Complete Issue

Contributed Research Articles Solving Differential Equations in R, Karline Soetaert, Thomas Petzoldt and R. Woodrow Setzer Source References, Duncan Murdoch hglm: A Package for Fitting Hierarchical Generalized Linear Models, Lars Rönnegård, Xia Shen and Moudud Alam dclone: Data Cloning in R, Péter Sólymos stringr: Modern, Consistent String Processing, Hadley Wickham Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations, David Ardia and Lennart F. Hoogerheide cudaBayesreg: Bayesian Computation in CUDA, Adelino Ferreira da Silva binGroup: A Package for Group Testing, Christopher R. Bilder, Boan Zhang, Frank Schaarschmidt, and Joshua M. Tebbs The RecordLinkage Package: Detecting Errors in Data, Murat Sariyar and Andreas Borg spikeslab: Prediction and Variable Selection Using Spike and Slab Regression, Hemant Ishwaran, Udaya B. Kogalur, and J. Sunil Rao News and Notes What\u27s New? useR! 2010 Forthcoming Events: useR! 2011 Changes in R Changes on CRAN News from the Bioconductor Project R Foundation New

The R Journal (December 2017) 9(2): Complete Issue

Editorial, Roger Bivand Contributed Research Articles anchoredDistr: A Package for the Bayesian Inversion of Geostatistical Parameters with Multi-type and Multi-scale Data, Heather Savoy, Falk Heße, and Yoram Rubin dGAselID: An R Package for Selecting a Variable Number of Features in High Dimensional Data, Nicolae Teodor Melita and Stefan Holban Allele Imputation and Haplotype Determination from Databases Composed of Nuclear Families, Nathan Medina-Rodríguez and Ángelo Santana Visualization of Regression Models Using visreg, Patrick Breheny and Woodrow Burchett fourierin: An R package to compute Fourier integrals, Guillermo Basulto-Elias, Alicia Carriquiry, Kris De Brabanter, and Daniel J. Nordman Discrete Time Markov Chains with R, Giorgio Alfredo Spedicato CRTgeeDR: An R Package for Doubly Robust Generalized Estimating Equations Estimations in Cluster Randomized Trials with Missing Data, Melanie Prague, Rui Wang, and Victor De Gruttola queueing: A Package for Analysis Of Queueing Networks and Models in R, Pedro Cañadilla Jiménez and Yolanda Román Montoya ctmcd: An R Package for Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data, Marius Pfeuffer Furniture for Quantitative Scientists, Tyson S. Barrett and Emily Brignone BayesBD: An R Package for Bayesian Inference on Image Boundaries, Nicholas Syring and Meng Li arulesViz: Interactive Visualization of Association Rules with R, Michael Hahsler ManlyMix: An R Package for Manly Mixture Modeling, Xuwen Zhu and Volodymyr Melnykov adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data, Aurélie Siberchicot, Alice Julien-Laferrière, Anne-Béatrice Dufour, Jean Thioulouse, and Stéphane Dray carx: An R Package to Estimate Censored Autoregressive Time Series with Exogenous Covariates, Chao Wang and Kung-Sik Chan liureg: A Comprehensive R Package for the Liu Estimation of Linear Regression Model with Collinear Regressors, Muhammad Imdadullah, Muhammad Aslam, and Saima Altaf A Tidy Data Model for Natural Language Processing using cleanNLP, Taylor Arnold mle.tools: An R Package for Maximum Likelihood Bias Correction, Josmar Mazucheli, André Felipe B. Menezes, and Saralees Nadarajah afmToolkit: An R Package for Automated AFM Force-Distance Curves Analysis, Rafael Benítez, Vicente J. Bolós, and José-Luis Toca-Herrera The welchADF Package for Robust Hypothesis Testing in Unbalanced Multivariate Mixed Models with Heteroscedastic and Non-normal Data, Pablo J. Villacorta ider: Intrinsic Dimension Estimation with R, Hideitsu Hino rpsftm: An R Package for Rank Preserving Structural Failure Time Models, Annabel Allison, Ian R White, and Simon Bond anomalyDetection: Implementation of Augmented Network Log Anomaly Detection Procedures, Robert J. Gutierrez, Bradley C. Boehmke, Kenneth W. Bauer, Cade M. Saie, and Trevor J. Bihl Simulating Noisy, Nonparametric, and Multivariate Discrete Patterns, Ruby Sharma, Sajal Kumar, Hua Zhong, and Mingzhou Song glmmTMB Balances Speed and Flexibility Among Packages for Zero-inflated Generalized Linear Mixed Modeling, Mollie E. Brooks, Kasper Kristensen, Koen J. van Benthem, Arni Magnusson, Casper W. Berg, Anders Nielsen, Hans J. Skaug, Martin Mächler, and Benjamin M. Bolker Simulating Probabilistic Long-Term Effects in Models with Temporal Dependence, Christopher Gandrud and Laron K. Williams RQGIS: Integrating R with QGIS for Statistical Geocomputing, Jannes Muenchow, Patrick Schratz, and Alexander Brenning Partial Rank Data with the hyper2 Package: Likelihood Functions for Generalized Bradley-Terry Models, Robin K. S. Hankin riskRegression: Predicting the Risk of an Event using Cox Regression Models, Brice Ozenne, Anne Lyngholm Sørensen, Thomas Scheike, Christian Torp-Pedersen, and Thomas Alexander Gerds LeArEst: Length and Area Estimation from Data Measured with Additive Error, Mirta Benšić, Petar Taler, Safet Hamedović, Emmanuel Karlo Nyarko, and Kristian Sabo Splitting It Up: The spduration Split-Population Duration Regression Package for Time-Varying Covariates, Andreas Beger, Daniel W. Hill, Jr., Nils. W. Metternich, Shahryar Minhas, and Michael D. Ward Bayesian Regression Models for Interval-censored Data in R, Clifford Anderson-Bergman openEBGM: An R Implementation of the Gamma-Poisson Shrinker Data Mining Model, Travis Canida and John Ihrie rentrez: An R package for the NCBI eUtils API, David J. Winter An Introduction to Rocker: Docker Containers for R, Carl Boettiger and Dirk Eddelbuettel News and Notes Conference Report: useR!2017, Tobias Verbeke Conference Report: R in Insurance 2017, Nicolas Baradel, Christophe Dutang, and Caroline Hillairet Forwards Column, Stella Bollmann, Dianne Cook, Jasmine Dumas, John Fox, Julie Josse, Oliver Keyes, Carolin Strobl, Heather Turner, and Rudolf Debelak R Teaching Column, Matthias Gehrke, Reed Davis, Norman Matloff, Paul Thompson, Tiffany Chen, Emily Watkins, and Laurel Beckett R Foundation News, Torsten Hothorn Changes on CRAN, Kurt Hornik, Uwe Ligges, and Achim Zeileis News from the Bioconductor Project, Bioconductor Core Team Changes in R, R Core Tea