The End of a Myth: Distributed Transactions Can Scale

The common wisdom is that distributed transactions do not scale. But what if distributed transactions could be made scalable using the next generation of networks and a redesign of distributed databases? There would be no need for developers anymore to worry about co-partitioning schemes to achieve decent performance. Application development would become easier as data placement would no longer determine how scalable an application is. Hardware provisioning would be simplified as the system administrator can expect a linear scale-out when adding more machines rather than some complex sub-linear function, which is highly application specific. In this paper, we present the design of our novel scalable database system NAM-DB and show that distributed transactions with the very common Snapshot Isolation guarantee can indeed scale using the next generation of RDMA-enabled network technology without any inherent bottlenecks. Our experiments with the TPC-C benchmark show that our system scales linearly to over 6.5 million new-order (14.5 million total) distributed transactions per second on 56 machines.Comment: 12 page

Non-perturbative improvement of the vector current in Wilson lattice QCD

Many observables of interest in lattice QCD are extracted from correlation functions involving the vector current. If Wilson fermions are used, it is therefore of practical importance that, besides the action, the current be O($a$) improved in order to remove the leading discretization errors from the observables. Here we introduce and apply a new method to determine the improvement coefficient for the two most widely used discretizations of the current.Comment: 12 pages, 5 figure

WormBase: A modern Model Organism Information Resource

WormBase (https://wormbase.org/) is a mature Model Organism Information Resource supporting researchers using the nematode Caenorhabditis elegans as a model system for studies across a broad range of basic biological processes. Toward this mission, WormBase efforts are arranged in three primary facets: curation, user interface and architecture. In this update, we describe progress in each of these three areas. In particular, we discuss the status of literature curation and recently added data, detail new features of the web interface and options for users wishing to conduct data mining workflows, and discuss our efforts to build a robust and scalable architecture by leveraging commercial cloud offerings. We conclude with a description of WormBase\u27s role as a founding member of the nascent Alliance of Genome Resources

Frequency-splitting estimators of single-propagator traces

Single-propagator traces are the most elementary fermion Wick contractions which occur in numerical lattice QCD, and are usually computed by introducing random-noise estimators to profit from volume averaging. The additional contribution to the variance induced by the random noise is typically orders of magnitude larger than the one due to the gauge field. We propose a new family of stochastic estimators of single-propagator traces built upon a frequency splitting combined with a hopping expansion of the quark propagator, and test their efficiency in two-flavour QCD with pions as light as 190 MeV. Depending on the fermion bilinear considered, the cost of computing these diagrams is reduced by one to two orders of magnitude or more with respect to standard random-noise estimators. As two concrete examples of physics applications, we compute the disconnected contributions to correlation functions of two vector currents in the isosinglet omega channel and to the hadronic vacuum polarization relevant for the muon anomalous magnetic moment. In both cases, estimators with variances dominated by the gauge noise are computed with a modest numerical effort. Theory suggests large gains for disconnected three and higher point correlation functions as well. The frequency-splitting estimators and their split-even components are directly applicable to the newly proposed multi-level integration in the presence of fermions.Comment: 26 pages, 8 figures, LaTe

SUSY Production Cross Sections

We summarize the status of next-to-leading order perturbative quantum chromodynamics (pQCD) calculations of the cross sections for the production of squarks, gluinos, neutralinos, charginos, and sleptons as a function of the produced sparticle masses in proton-antiproton collisions at the hadronic center-of-mass energy 2 TeV.Comment: 7 pages, latex, plus one .eps figure; subgroup summary for the SUGRA working group of the Fermilab workshop Physics at Run II -- Supersymmetry/Higg

Taming systems to create enabling environments for HCV treatment: negotiating trust in the drug and alcohol setting.

HCV (hepatitis C) treatment uptake among the population most affected - people who inject drugs - is suboptimal. Hospital based treatment provision is one evidenced barrier to HCV treatment uptake. In response, HCV treatment is increasingly located in treatment settings seen as more amenable to people who inject drugs, such as drug and alcohol services. We explored the accessibility of HCV treatment provision at two such partnerships. Data collection comprised qualitative interviews collected in 2011 and 2012 with 35 service users and 14 service providers of HCV treatment in London, United Kingdom. We draw here primarily on thematic analyses of service provider accounts, yet narratives relating to trust and environment emerged unsolicited in both user and provider accounts of negotiated HCV treatment access. A key theme in service provider accounts were strategies they deployed to 'tame' the treatment system so as to create an 'enabling environment' of care, in which trust was a critical feature. This 'taming' of the system was enacted through practices of 'negotiated flexibility', including in relation to appointments, eligibility, and phlebotomy. Service user accounts accentuated familiar environments and known health providers as those most trusted, and the potentially stigmatising effects of negotiating treatment in unfamiliar territory, especially hospital settings. Whilst noting the effects of provider strategies to negotiate flexibility on behalf of would-be patients seeking treatment, we conclude by noting the limits of trust relations in settings of constrained choice

Mechanism of ferroelectric instabilities in non d^0 perovskites: LaCrO_3 versus CaMnO_3

The incompatibility of partial d occupation on the perovskite B-site with the standard charge transfer mechanism for ferroelectricity has been a central paradigm in multiferroics research. Nevertheless, it was recently shown by density functional theory calculations that CaMnO_3 exhibits a polar instability that even dominates over the octahedral tilting for slightly enlarged unit cell volume. Here, we present similar calculations for LaCrO_3, which has the same d^3 B-site electron configuration as CaMnO_3. We find that LaCrO_3 exhibits a very similar, albeit much weaker, polar instability as CaMnO_3. In addition, while the Born effective charge (BEC) of the Mn^{4+} cation in CaMnO_3 is highly anomalous, the BEC of Cr^{3+} in LaCrO_3 is only slightly enhanced. By decomposing the BECs into contributions of individual Wannier functions we show that the ferroelectric instabilities in both systems can be understood in terms of charge transfer between TM d and O p states, analogously to the standard d^0 perovskite ferroelectrics.Comment: 6 pages, 4 figures, 2 table

An estimate for the thermal photon rate from lattice QCD

We estimate the production rate of photons by the quark-gluon plasma in lattice QCD. We propose a new correlation function which provides better control over the systematic uncertainty in estimating the photon production rate at photon momenta in the range {\pi}T/2 to 2{\pi}T. The relevant Euclidean vector current correlation functions are computed with $N_{\mathrm f}$ = 2 Wilson clover fermions in the chirally-symmetric phase. In order to estimate the photon rate, an ill-posed problem for the vector-channel spectral function must be regularized. We use both a direct model for the spectral function and a model-independent estimate from the Backus-Gilbert method to give an estimate for the photon rate.Comment: 15 pages, 11 figures, talk presented at 35th annual International Symposium on Lattice Field Theory, 18-24 June 2017, Granada, Spai

Organic amendment increases arbuscular mycorrhizal fungal diversity in primary coastal dunes

Plastic pots were inserted beneath seedlings of a shallow-rooted C4 grass species, Ischaemum indicum, with and without a root-impenetrable nylon sachet filled with organic matter (OM) amendment, at seven stations along an interrupted belt transect in which plant community and soil chemistry had been previously surveyed. The transect was perpendicular to mean high-water mark (MH-WM) across a primary coastal dune system in Goa, India, where summer monsoon is the predominant weather feature. The Quadrat survey of plant frequency was made in stations when the above-ground biomass was estimated to be highest. Arbuscular mycorrhiza fungal (AMF) spore density and diversity were determined morphologically in amended and control pots soils, and in OM sachet residues, after host-plant desiccation when monsoon rains had ceased. Twenty-seven AM fungal spore morphotypes were isolated from the pots containing OM amended rhizosphere soils, 19 from controls and 14 from OM residues in the sachets. Gigaspora margarita proved to be the dominant spore in all treatments. Eight morphotypes recovered from amended pots were not recovered from the controls. There was an increasing trend in species diversity in amended pots away from MH-WM. Spore recovery from the three regimes showed variable distribution that indicated differing AMF species strategies