Next Generation Cluster Editing

This work aims at improving the quality of structural variant prediction from the mapped reads of a sequenced genome. We suggest a new model based on cluster editing in weighted graphs and introduce a new heuristic algorithm that allows to solve this problem quickly and with a good approximation on the huge graphs that arise from biological datasets

Allocating Sampling Effort to Equalize Precision of Electrofishing Catch per Unit Effort

We used a spatially explicit simulation model to examine the effects of lake shoreline length and lakewide fish density on electrofishing catch-per-unit-effort (CPUE) estimates of fish density. We also tested model predictions regarding the influence of shoreline length and fish density on precision of CPUE estimates by analyzing electrofishing data from Ohio reservoirs for juvenile gizzard shad Dorosoma cepedianum, which is a schooling fish, and largemouth bass Micropterus salmoides, a more solitary fish. Our goals were to estimate the impact of these factors on variability associated with population estimates derived from CPUE and to determine how these factors influence the minimum number of transects required to sample populations with a reliable degree of precision. Neither ‘‘minimum transect number’’ (number of transects sampled per lake in which all of 10 replicate simulations provided density estimates within 610% of the mean) nor ‘‘minimum variance’’ (variance among estimates given 20 transects/estimate) were affected by the size of lake being sampled. However, minimum transect number decreased with lakewide fish density, and minimum variance increased with fish density, particularly when fish were patchily distributed. Our results show that it is reasonable to choose one effort level (i.e., a constant number of transects per lake) for a variety of systems. This constant level of effort can achieve acceptable precision in systems differing in lake shoreline length, fish density, and fish patchiness, except in those systems having extremely low overall fish densities. In this case, more transects may be required.Support for this project was provided by Federal Aid in Sport Fish Restoration, project F-69-P, administered jointly by the U.S. Fish and Wildlife Service and the Ohio Division of Wildlife, and by the Department of Zoology, Ohio State University

A Possible Detection of Occultation by a Proto-planetary Clump in GM Cephei

GM Cep in the young (~ 4 Myr) open cluster Trumpler 37 has been known to be an abrupt variable and to have a circumstellar disk with very active accretion. Our monitoring observations in 2009–2011 revealed the star to show sporadic ?are events, each with brightening of . 0.5 mag lasting for days. These brightening events, associated with a color change toward the blue, should originate from an increased accretion activity. Moreover, the star also underwent a brightness drop of ~ 1 mag lasting for about a month, during which the star became bluer when fainter. Such brightness drops seem to have a recurrence time scale of a year, as evidenced in our data and the photometric behavior of GM Cep over a century. Between consecutive drops, the star brightened gradually by about 1 mag and became blue at peak luminosity. We propose that the drop is caused by obscuration of the central star by an orbiting dust concentration. The UX Orionis type of activity in GM Cep therefore exemplifies the disk inhomogeneity process in transition between grain coagulation and planetesimal formation in a young circumstellar disk

Improved charge carrier separation in barium tantalate composites investigated by laser flash photolysis

Charge carrier dynamics in phase pure Ba5Ta4O15 and in a Ba5Ta4O15–Ba3Ta5O15 composite have been studied by means of diffuse reflectance laser flash photolysis spectroscopy in the presence and absence of an electron donor, in order to reveal the reason for the improved photocatalytic performance of the latter. For the first time the transient absorption of trapped electrons with a maximum at around 650 nm and of trapped holes with a transient absorption maximum at around 310 nm is reported for tantalates. The decay kinetics of the photogenerated charge carriers could be fitted by second order reaction kinetics, and the direct recombination of the trapped electrons with the trapped holes was proven. In the absence of an electron donor, no difference in the decay behavior between the phase pure material and the composite material is found. In the presence of methanol, for the pure phase Ba5Ta4O15 the recombination of the charge carriers could not be prevented and the trapped electrons also recombine with the ˙CH2OH radical formed via the methanol oxidation by the trapped holes. However, in the composite, the electron can be stored in the system, the ˙CH2OH radical injects an electron into the conduction band of the second component of the composite, i.e., Ba3Ta5O15. Thus, the electrons are available for an extended period to induce reduction reactions

Modeling sources of variation for growth and predatory demand of Lake Erie walleye (Stizostedion vitreum), 1986-1995

Abstract in English and FrenchGiven the variable nature of the Lake Erie ecosystem, we investigated biotic and abiotic sources of variation for walleye (Stizostedion vitreum) growth, consumption, and population-wide predatory demand. We determined how temperature, population structure, and age-specific consumption influenced walleye growth and consumption during 1986-1995. For each year, we used individual-based bioenergetics modeling to compare growth and consumption by walleye in Lake Erie's western or central basin with those of walleye moving seasonally between basins. Population structure strongly affected walleye growth and consumption but had little influence on interbasin growth rate comparisons. Based on water temperature alone, growth and consumption by western basin walleye were generally lower than for central basin or migratory populations and were more limited by summer water temperatures. In simulations combining effects of population structure, temperature, and age-specific consumption, migratory walleye grew most rapidly, taking advantage of temperature-related growth peaks in both basins. Estimates of walleye predatory demand declined with population size from 1988 through 1995. With natural feedbacks, predatory demand interacts with prey production, limiting walleye reproductive potential when prey availability is low. However, immediate impact on predatory inertia is limited, complicating our ability to predict how predatory demand and prey availability interact in Lake Erie.Support for this project was provided by a University Fellowship from the Graduate School of the Ohio State University (to M.W.K.) and by Federal Aid in Sportfish Restoration F-69-P, administered jointly by the U.S. Fish and Wildlife Service and the Ohio Division of Wildlife, and by the Department of Zoology, Ohio State University

Increased Coprophagic Activity of the Beetle, Tenebrio molitor, on Feces Containing Eggs of the Tapeworm, Hymenolepis diminuta

When provided with fecal pellets from uninfected (control) rats and rats infected with the tapeworm Hymenolepis diminuta, more fed and starved (72 h) female and starved male Tenebrio molitor fed on fecal pellets from infected- than from control rats; compared to fecal pellets from controls rats, fed males avoided the infective fecal pellets. Uninfective and infective fecal pellets had similar moisture contents, so increased coprophagic activity was not due to differences in moisture content. Fed and starved males and females were fed on fecal pellets containing tapeworm eggs and examined for cysticercoids. Significantly greater numbers of starved beetles than fed beetles were infected with cysticercoids, but the numbers of infected males and females within each treatment were not significantly different. On the other hand, males contained significantly greater numbers of cysticercoids than did females, and there was no significant difference between the numbers of cysticercoids recovered from fed and starved beetles. The data support the hypothesis that the feeding behavior of T. molitor on rat feces is altered by the presence of tapeworm eggs. The data demonstrated further that transmission dynamics are affected by a complex interaction of the beetle's sex and nutritional status

New SPB stars in the field of the young open cluster NGC 2244 discovered by the MOST photometric satellite

During two weeks of nearly continuous optical photometry of the young open cluster NGC 2244 obtained by the MOST satellite, we discovered two new SPB stars, GSC 00154-00785 and GSC 00154-01871. We present frequency analyses of the MOST light curves of these stars, which reveal two oscillation frequencies (0.61 and 0.71 c/d) in GSC 00154-00785 and two (0.40 and 0.51 c/d) in GSC 00154-01871. These frequency ranges are consistent with g-modes of $\ell \leq 2$ excited in models of main-sequence or pre-main-sequence (PMS) stars of masses 4.5 - 5 $M_{\odot}$ and solar composition $(X, Z)= (0.7, 0.02)$. Published proper motion measurements and radial velocities are insufficient to establish unambiguously cluster membership for these two stars. However, the PMS models which fit best their eigenspectra have ages consistent with NGC 2244. If cluster membership can be confirmed, these would be the first known PMS SPB stars, and would open a new window on testing asteroseismically the interior structures of PMS stars.Comment: accepted for publication in MNRA