The Sampling Strategy for Countryside Survey (up to 2007). Revised and Updated from: ‘The Sampling Strategy for Countryside Survey’, C.J. Barr, September 1998. DETR CONTRACT No. CR0212

The sampling strategy used for the field survey element of Countryside Survey 2007 is the latest in a series of developments of the ITE Land Classification, first used to stratify a field sample in 1978. To understand exactly how the present Countryside Survey sampling framework has been derived, it is important to review the concepts and activities that have evolved over the last 30 years since the first survey was carried out. It is possible that if the earlier time-series data were not so valuable as a basis for detecting change, and a fresh start could be made today, then a different sampling strategy might be well be adopted. However, the present Countryside Survey methodology is inextricably linked with its predecessors and an understanding of these is essential

Remediation of Contaminated Soils by Solvent Flushing

Solvent flushing is a potential technique for remediating a waste disposal/spill site contaminated with organic chemicals. This technique involves the injection of a solvent mixture (e.g., water plus alcohols) that enhances contaminant solubility, reduces the retardation factor, and increases the release rates of the contaminants. A simulation model is developed to predict contaminant elution curves during solvent flushing for the case of one‐dimensional, steady flow through a contaminated medium. Column experiments are conducted with a Eustis fine sand that is initially equilibrated with an aqueous naphthalene solution, and then eluted with different methanol‐water mixtures to remove the naphthalene. The model simulations, based on parameter values estimated from literature data, agree well with the measured elution profiles. Solvent flushing experiments, where the soil was initially equilibrated with a solution of naphthalene and anthracene, show that compounds with different retardation factors are separated at low cosolvent contents, while coelution of the compounds occurs at higher contents. In general, the smaller the retardation factor in water and the higher the cosolvent fraction, the faster the contaminant is recovered. The presence of nonequilibrium conditions, soil heterogeneity, and type of cosolvent will influence the time required to recover the contaminant.\u

What are the costs and benefits of using aerial photography to survey habitats in 1km squares?

Undertaking a field survey, such as the Countryside Survey (Carey et al., 2008) or the Welsh Glastir Monitoring and Evaluation Programme (GMEP) (Emmett and GMEP team, 2014), is a relatively expensive and time consuming way of collecting habitat data in comparison with remotely sensed techniques. In order to assess the information gained from a field survey in relation to the information that can be gained from aerial photography, a short project has been undertaken with the following objectives: • To measure the time taken to survey a 1km square using aerial photography (for a range of different and UK representative landscape types) • To measure the accuracy and level of detail of data derived using this method relative to data collected using field survey • To provide an idea of time costs associated with each of the methods • To determine the extent to which Priority Habitats can be assessed using remotely sensed methods in addition to Broad Habitats

Woodland Survey of Great Britain 1971-2001

The Woodland Survey of Great Britain is a unique data set, consisting of a detailed range of ecological measurements at a national scale, covering a time span of 30 years. A set of 103 woods spread across Britain were first surveyed in 1971, which were again surveyed in 2000–2003 (for convenience referred to subsequently as the “2001 survey”). Standardised methods of describing the trees, shrubs, ground flora, soils and general habitats present were used for both sets of surveys. The sample of 1648 plots spread through 103 woodland sites located across Britain makes it probably the most extensive quantitative ecological woodland survey undertaken in Britain; it is also notable for the range of sites that have been revisited after such a long interval. The data set provides a unique opportunity to explore the effects of a range of potential drivers of woodland change that operated between 1971 and 2001. The data set is available in four discrete parts, which have been assigned the following DOIs: doi:10.5285/4d93f9ac-68e3-49cf-8a41-4d02a7ead81a (Kirby et al., 2013b), doi:10.5285/d6409d40-58fe-4fa7-b7c8-71a105b965b4 (Kirby et al., 2013d), doi:10.5285/fb1e474d-456b-42a9- 9a10-a02c35af10d2 (Kirby et al., 2013c), doi:10.5285/2d023ce9-6dbe-4b4f-a0cd-34768e1455ae (Kirby et al., 2013a)

The Nucleon Anapole Form Factor in Chiral Perturbation Theory to Sub-leading Order

The anapole form factor of the nucleon is calculated in chiral perturbation theory to sub-leading order. This is the lowest order in which the isovector anapole form factor does not vanish. The anapole moment depends on counterterms that reflect short-range dynamics, but the momentum dependence or the form factor is determined by pion loops in terms of parameters that could in principle be fixed from other processes. If these parameters are assumed to have natural size, the sub-leading corrections do not exceed ~ 30% at momentum Q ~ 300 MeV.Comment: 11 pages, 6 figures, epsf.sty, submitted to Phys. Lett

Scoping biological indicators of soil quality Phase II. Defra Final Contract Report SP0534

This report presents results from a field assessment of a limited suite of potential biological indicators of soil quality to investigate their suitability for national-scale soil monitoring

Proteomic profiling of neuromas reveals alterations in protein composition and local protein synthesis in hyper-excitable nerves

Neuropathic pain may arise following peripheral nerve injury though the molecular mechanisms associated with this are unclear. We used proteomic profiling to examine changes in protein expression associated with the formation of hyper-excitable neuromas derived from rodent saphenous nerves. A two-dimensional difference gel electrophoresis ( 2D-DIGE) profiling strategy was employed to examine protein expression changes between developing neuromas and normal nerves in whole tissue lysates. We found around 200 proteins which displayed a > 1.75-fold change in expression between neuroma and normal nerve and identified 55 of these proteins using mass spectrometry. We also used immunoblotting to examine the expression of low-abundance ion channels Nav1.3, Nav1.8 and calcium channel alpha 2 delta-1 subunit in this model, since they have previously been implicated in neuronal hyperexcitability associated with neuropathic pain. Finally, S(35)methionine in vitro labelling of neuroma and control samples was used to demonstrate local protein synthesis of neuron-specific genes. A number of cytoskeletal proteins, enzymes and proteins associated with oxidative stress were up-regulated in neuromas, whilst overall levels of voltage-gated ion channel proteins were unaffected. We conclude that altered mRNA levels reported in the somata of damaged DRG neurons do not necessarily reflect levels of altered proteins in hyper-excitable damaged nerve endings. An altered repertoire of protein expression, local protein synthesis and topological re-arrangements of ion channels may all play important roles in neuroma hyper-excitability

The natural furanone (5<i>Z</i>)-4-bromo-5-(bromomethylene)-3-butyl-2(5<i>H</i>)-furanone disrupts quorum sensing-regulated gene expression in <i>Vibrio harveyi</i> by decreasing the DNA-binding activity of the transcriptional regulator protein luxR

This study aimed at getting a deeper insight in the molecular mechanism by which the natural furanone (5Z)-4-bromo-5-(bromomethylene)-3-butyl-2(5H)- furanone disrupts quorum sensing in Vibrio harveyi. Bioluminescence experiments with signal molecule receptor double mutants revealed that the furanone blocks all three channels of the V. harveyi quorum sensing system. In further experiments using mutants with mutations in the quorum sensing signal transduction pathway, the compound was found to block quorum sensing-regulated bioluminescence by interacting with a component located downstream of the Hfq protein. Furthermore, reverse transcriptase real-time polymerase chain reaction with specific primers showed that there was no effect of the furanone on luxRVh mRNA levels in wild-type V. harveyi cells. In contrast, mobility shift assays showed that in the presence of the furanone, significantly lower levels of the LuxRVh response regulator protein were able to bind to its target promoter sequences in wild-type V. harveyi. Finally, tests with purified LuxRVh protein also showed less shifts with furanone-treated LuxRVh, whereas the LuxRVh concentration was found not to be altered by the furanone (as determined by SDS-PAGE). Therefore, our data indicate that the furanone blocks quorum sensing in V. harveyi by rendering the quorum sensing master regulator protein LuxRVh unable to bind to the promoter sequences of quorum sensing-regulated genes