WR-ONE2SET: Towards Well-Calibrated Keyphrase Generation

Keyphrase generation aims to automatically generate short phrases summarizing an input document. The recently emerged ONE2SET paradigm (Ye et al., 2021) generates keyphrases as a set and has achieved competitive performance. Nevertheless, we observe serious calibration errors outputted by ONE2SET, especially in the over-estimation of $\varnothing$ token (means "no corresponding keyphrase"). In this paper, we deeply analyze this limitation and identify two main reasons behind: 1) the parallel generation has to introduce excessive $\varnothing$ as padding tokens into training instances; and 2) the training mechanism assigning target to each slot is unstable and further aggravates the $\varnothing$ token over-estimation. To make the model well-calibrated, we propose WR-ONE2SET which extends ONE2SET with an adaptive instance-level cost Weighting strategy and a target Re-assignment mechanism. The former dynamically penalizes the over-estimated slots for different instances thus smoothing the uneven training distribution. The latter refines the original inappropriate assignment and reduces the supervisory signals of over-estimated slots. Experimental results on commonly-used datasets demonstrate the effectiveness and generality of our proposed paradigm.Comment: EMNLP202

Microresonator-referenced soliton microcombs with zeptosecond-level timing noise

Optical frequency division relies on optical frequency combs to coherently translate ultra-stable optical frequency references to the microwave domain. This technology has enabled microwave synthesis with ultralow timing noise, but the required instruments are too bulky for real-world applications. Here, we develop a compact optical frequency division system using microresonator-based frequency references and comb generators. The soliton microcomb formed in an integrated Si$_3$N$_4$ microresonator is stabilized to two lasers referenced to an ultrahigh-$Q$ MgF$_2$ microresonator. Photodetection of the soliton pulse train produces 25 GHz microwaves with absolute phase noise of -141 dBc/Hz (547 zs Hz$^{-1/2}$) at 10 kHz offset frequency. The synthesized microwaves are tested as local oscillators in jammed communication channels, resulting in improved fidelity compared with those derived from electronic oscillators. Our work demonstrates unprecedented coherence in miniature microwave oscillators, providing key building blocks for next-generation timekeeping, navigation, and satellite communication systems.Comment: 8 pages, 7 figures and table

Diffraction characteristics of radiated tilted fiber grating and its spectrometer application

We have numerically and experimentally presented the diffraction characteristics of radiated tilted fiber grating (RTFG) in terms of the spectrum, bandwidth, degree of polarization, angular dispersion, and temperature crosstalk. The theoretical and experimental results have shown that the polarization property, bandwidth, and dispersion of RTFG highly depended on the tilt angle of RTFG, and the RTFG has ultra-low temperature crosstalk. We have simulated the transmission spectrum of the RTFG with different tilt angles (25°, 31°, 38°, 45°, and 54°), in which the results show that the larger tilt angle has the wider bandwidth. The RTFGs with the tilt angle of 25°, 31°, 38°, 45°, and 54° have the 3dB bandwidth of 110 nm, 144 nm, 182 nm, 242 nm, and 301 nm, respectively. Besides, the degree of polarization (DOP) of the radiated light from RTFG with the different tilt angles are 0.876, 0.944, 0.967, 0.998, and 0.970, respectively, and the RTFG has the maximum DOP at the tilt angle of 45°, which could be used as single-polarization diffraction device. The experimental results show that with further increase or decrease of the tilt angle, the DOP of radiated light of RTFG would decrease. Both the theoretical and experimental results show that the smaller tilt angle could greatly improve the diffraction angular dispersion of RTFG, in which the 25°, 31°, 38°, and 45° RTFG have the angular dispersion of 0.2288 °/nm, 0.1026 °/nm, 0.0714 °/nm, and 0.0528 °/nm, respectively. Due to the broad working bandwidth, the diffraction angles of RTFG have ultra-low temperature crosstalk, where -0.00042, -0.00054, -0.00064, and -0.00099 degree / °C at the tilt angle of 25°, 31°, 38°, and 45°. Finally, we have demonstrated a miniaturized spectrometer integrated by a 25° RTFG, which has a high spectral resolution of 0.08 nm. The proposed RTFG would be an ideal in-fiber diffraction device and widely applied in spectral analysis, space optical communication, and Lidar areas

Critical current density: Measurements vs. reality

Different experimental techniques are employed to evaluate the critical current density (Jc), namely transport current measurements and two different magnetisation measurements forming quasi-equilibrium and dynamic critical states. Our technique-dependent results for superconducting YBa 2Cu3O7 (YBCO) film and MgB2 bulk samples show an extremely high sensitivity of Jc and associated interpretations, such as irreversibility fields and Kramer plots, which lose meaning without a universal approach. We propose such approach for YBCO films based on their unique pinning features. This approach allows us to accurately recalculate the magnetic-field-dependent Jc obtained by any technique into the Jc behaviour, which would have been measured by any other method without performing the corresponding experiments. We also discovered low-frequency-dependent phenomena, governing flux dynamics, but contradicting the considered ones in the literature. The understanding of these phenomena, relevant to applications with moving superconductors, can clarify their dramatic impact on the electric-field criterion through flux diffusivity and corresponding measurements. © Copyright EPLA, 2013

Modulation of host cell processes by T3SS effectors

Two of the enteric Escherichia coli pathotypes-enteropathogenic E. coli (EPEC) and enterohaemorrhagic E. coli (EHEC)-have a conserved type 3 secretion system which is essential for virulence. The T3SS is used to translocate between 25 and 50 bacterial proteins directly into the host cytosol where they manipulate a variety of host cell processes to establish a successful infection. In this chapter, we discuss effectors from EPEC/EHEC in the context of the host proteins and processes that they target-the actin cytoskeleton, small guanosine triphosphatases and innate immune signalling pathways that regulate inflammation and cell death. Many of these translocated proteins have been extensively characterised, which has helped obtain insights into the mechanisms of pathogenesis of these bacteria and also understand the host pathways they target in more detail. With increasing knowledge of the positive and negative regulation of host signalling pathways by different effectors, a future challenge is to investigate how the specific effector repertoire of each strain cooperates over the course of an infection

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe