DNA-Interacting Characteristics of the Archaeal Rudiviral Protein SIRV2_Gp1

Whereas the infection cycles of many bacterial and eukaryotic viruses have been characterized in detail, those of archaeal viruses remain largely unexplored. Recently, studies on a few model archaeal viruses such as SIRV2 (Sulfolobus islandicus rod-shaped virus) have revealed an unusual lysis mechanism that involves the formation of pyramidal egress structures on the host cell surface. To expand understanding of the infection cycle of SIRV2, we aimed to functionally characterize gp1, which is a SIRV2 gene with unknown function. The SIRV2_Gp1 protein is highly expressed during early stages of infection and it is the only protein that is encoded twice on the viral genome. It harbours a helix-turn-helix motif and was therefore hypothesized to bind DNA. The DNA-binding behavior of SIRV2_Gp1 was characterized with electrophoretic mobility shift assays and atomic force microscopy. We provide evidence that the protein interacts with DNA and that it forms large aggregates, thereby causing extreme condensation of the DNA. Furthermore, the N-terminal domain of the protein mediates toxicity to the viral host Sulfolobus. Our findings may lead to biotechnological applications, such as the development of a toxic peptide for the containment of pathogenic bacteria, and add to our understanding of the Rudiviral infection cycle.status: publishe

Exploring the dark matter inelastic frontier with 79.6 days of PandaX-II data

We report here the results of searching for inelastic scattering of dark matter (initial and final state dark matter particles differ by a small mass splitting) with nucleon with the first 79.6-day of PandaX-II data (Run 9). We set the upper limits for the spin independent WIMP-nucleon scattering cross section up to a mass splitting of 300 keV/c$^2$ at two benchmark dark matter masses of 1 and 10 TeV/c$^2$.Comment: 5 pages, 6 figure

Letter of Intent: Jinping Neutrino Experiment

Jinping Neutrino Experiment (Jinping) is proposed to significantly improve measurements on solar neutrinos and geoneutrinos in China Jinping Laboratory - a lab with a number of unparalleled features, thickest overburden, lowest reactor neutrino background, etc., which identify it as the world-best low-energy neutrino laboratory. The proposed experiment will have target mass of 4 kilotons of liquid scintillator or water-based liquid scintillator, with a fiducial mass of 2 kilotons for neutrino-electron scattering events and 3 kilotons for inverse-beta interaction events. A number of initial sensitivities studies have been carried out, including on the transition phase for the solar neutrinos oscillation from the vacuum to the matter effect, the discovery of solar neutrinos from the carbon-nitrogen-oxygen (CNO) cycle, the resolution of the high and low metallicity hypotheses, and the unambiguous separation on U and Th cascade decays from the dominant crustal anti-electron neutrinos in China.Comment: Proposal for the Jinping Neutrino Experimen

Dark Matter Results From 54-Ton-Day Exposure of PandaX-II Experiment

We report a new search of weakly interacting massive particles (WIMPs) using the combined low background data sets in 2016 and 2017 from the PandaX-II experiment in China. The latest data set contains a new exposure of 77.1 live day, with the background reduced to a level of 0.8$\times10^{-3}$ evt/kg/day, improved by a factor of 2.5 in comparison to the previous run in 2016. No excess events were found above the expected background. With a total exposure of 5.4$\times10^4$ kg day, the most stringent upper limit on spin-independent WIMP-nucleon cross section was set for a WIMP with mass larger than 100 GeV/c$^2$, with the lowest exclusion at 8.6$\times10^{-47}$ cm$^2$ at 40 GeV/c$^2$.Comment: Supplementary materials at https://pandax.sjtu.edu.cn/articles/2nd/supplemental.pdf version 2 as accepted by PR

A Multi-Strategy Adaptive Coati Optimization Algorithm for Constrained Optimization Engineering Design Problems.

Optimization algorithms serve as a powerful instrument for tackling optimization issues and are highly valuable in the context of engineering design. The coati optimization algorithm (COA) is a novel meta-heuristic algorithm known for its robust search capabilities and rapid convergence rate. However, the effectiveness of the COA is compromised by the homogeneity of its initial population and its reliance on random strategies for prey hunting. To address these issues, a multi-strategy adaptive coati optimization algorithm (MACOA) is presented in this paper. Firstly, Lévy flights are incorporated into the initialization phase to produce high-quality initial solutions. Subsequently, a nonlinear inertia weight factor is integrated into the exploration phase to bolster the algorithm’s global search capabilities and accelerate convergence. Finally, the coati vigilante mechanism is introduced in the exploitation phase to improve the algorithm’s capacity to escape local optima. Comparative experiments with many existing algorithms are conducted using the CEC2017 test functions, and the proposed algorithm is applied to seven representative engineering design problems. MACOA’s average rankings in the three dimensions (30, 50, and 100) were 2.172, 1.897, and 1.759, respectively. The results show improved optimization speed and better performance