A level-set method for the evolution of cells and tissue during curvature-controlled growth

Most biological tissues grow by the synthesis of new material close to the tissue's interface, where spatial interactions can exert strong geometric influences on the local rate of growth. These geometric influences may be mechanistic, or cell behavioural in nature. The control of geometry on tissue growth has been evidenced in many in-vivo and in-vitro experiments, including bone remodelling, wound healing, and tissue engineering scaffolds. In this paper, we propose a generalisation of a mathematical model that captures the mechanistic influence of curvature on the joint evolution of cell density and tissue shape during tissue growth. This generalisation allows us to simulate abrupt topological changes such as tissue fragmentation and tissue fusion, as well as three dimensional cases, through a level-set-based method. The level-set method developed introduces another Eulerian field than the level-set function. This additional field represents the surface density of tissue synthesising cells, anticipated at future locations of the interface. Numerical tests performed with this level-set-based method show that numerical conservation of cells is a good indicator of simulation accuracy, particularly when cusps develop in the tissue's interface. We apply this new model to several situations of curvature-controlled tissue evolutions that include fragmentation and fusion.Comment: 15 pages, 10 figures, 3 supplementary figure

Graphitic-BN Based Metal-free Molecular Magnets From A First Principle Study

We perform a first principle calculation on the electronic properties of carbon doped graphitic boron nitride graphitic BN. It was found that carbon substitution for either boron or nitrogen atom in graphitic BN can induce spontaneous magnetization. Calculations based on density functional theory with the local spin density approximation on the electronic band structure revealed a spin polarized, dispersionless band near the Fermi energy. Spin density contours showed that the magnetization density originates from the carbon atom. The magnetization can be attributed to the carbon 2p electron. Charge density distribution shows that the carbon atom forms covalent bonds with its three nearest neighbourhood. The spontaneous magnetization survives the curvature effect in BN nanotubes, suggesting the possibility of molecular magnets made from BN. Compared to other theoretical models of light-element or metal-free magnetic materials, the carbon-doped BN are more experimentally accessible and can be potentially useful.Comment: 8 pages, 4 figure

Non-linear Evolution of Matter Power Spectrum in Modified Theory of Gravity

We present a formalism to calculate the non-linear matter power spectrum in modified gravity models that explain the late-time acceleration of the Universe without dark energy. Any successful modified gravity models should contain a mechanism to recover General Relativity (GR) on small scales in order to avoid the stringent constrains on deviations from GR at solar system scales. Based on our formalism, the quasi non-linear power spectrum in the Dvali-Gabadadze-Porratti (DGP) braneworld models and $f(R)$ gravity models are derived by taking into account the mechanism to recover GR properly. We also extrapolate our predictions to fully non-linear scales using the Parametrized Post Friedmann (PPF) framework. In $f(R)$ gravity models, the predicted non-linear power spectrum is shown to reproduce N-body results. We find that the mechanism to recover GR suppresses the difference between the modified gravity models and dark energy models with the same expansion history, but the difference remains large at weakly non-linear regime in these models. Our formalism is applicable to a wide variety of modified gravity models and it is ready to use once consistent models for modified gravity are developed.Comment: 25 pages, 8 figures, comparison to N-body simulations in DGP added, published in PR

Dynamic Matter-Wave Pulse Shaping

In this paper we discuss possibilities to manipulate a matter-wave with time-dependent potentials. Assuming a specific setup on an atom chip, we explore how one can focus, accelerate, reflect, and stop an atomic wave packet, with, for example, electric fields from an array of electrodes. We also utilize this method to initiate coherent splitting. Special emphasis is put on the robustness of the control schemes. We begin with the wave packet of a single atom, and extend this to a BEC, in the Gross-Pitaevskii picture. In analogy to laser pulse shaping with its wide variety of applications, we expect this work to form the base for additional time-dependent potentials eventually leading to matter-wave pulse shaping with numerous application

Repulsive Fermions in Optical Lattices: Phase separation versus Coexistence of Antiferromagnetism and d-Superfluidity

We investigate a system of fermions on a two-dimensional optical square lattice in the strongly repulsive coupling regime. In this case, the interactions can be controlled by laser intensity as well as by Feshbach resonance. We compare the energetics of states with resonating valence bond d-wave superfluidity, antiferromagnetic long range order and a homogeneous state with coexistence of superfluidity and antiferromagnetism. We show that the energy density of a hole $e_{hole}(x)$ has a minimum at doping $x=x_c$ that signals phase separation between the antiferromagnetic and d-wave paired superfluid phases. The energy of the phase-separated ground state is however found to be very close to that of a homogeneous state with coexisting antiferromagnetic and superfluid orders. We explore the dependence of the energy on the interaction strength and on the three-site hopping terms and compare with the nearest neighbor hopping {\it t-J} model

Quantum Monte Carlo simulations of a particle in a random potential

In this paper we carry out Quantum Monte Carlo simulations of a quantum particle in a one-dimensional random potential (plus a fixed harmonic potential) at a finite temperature. This is the simplest model of an interface in a disordered medium and may also pertain to an electron in a dirty metal. We compare with previous analytical results, and also derive an expression for the sample to sample fluctuations of the mean square displacement from the origin which is a measure of the glassiness of the system. This quantity as well as the mean square displacement of the particle are measured in the simulation. The similarity to the quantum spin glass in a transverse field is noted. The effect of quantum fluctuations on the glassy behavior is discussed.Comment: 23 pages, 7 figures included as eps files, uses RevTeX. Accepted for publication in J. of Physics A: Mathematical and Genera

Fluctuations Do Matter: Large Noise-Enhanced Halos in Charged-Particle Beams

The formation of beam halos has customarily been described in terms of a particle-core model in which the space-charge field of the oscillating core drives particles to large amplitudes. This model involves parametric resonance and predicts a hard upper bound to the orbital amplitude of the halo particles. We show that the presence of colored noise due to space-charge fluctuations and/or machine imperfections can eject particles to much larger amplitudes than would be inferred from parametric resonance alone.Comment: 13 pages total, including 5 figure

One-loop fermionic corrections to the instanton transition in two dimensional chiral Higgs model

The one-loop fermionic contribution to the probability of an instanton transition with fermion number violation is calculated in the chiral Abelian Higgs model in 1+1 dimensions, where the fermions have a Yukawa coupling to the scalar field. The dependence of the determinant on fermionic, scalar and vector mass is determined. We show in detail how to renormalize the fermionic determinant in partial wave analysis, which is convenient for computations.Comment: 36 pages, 5 figure

A phenomenological model of galaxy clusters

We present a simple model to describe the dark matter density, the gas density, and the gas temperature profiles of galaxy clusters. Analytical expressions for these quantities are given in terms of only five free parameters with a clear physical meaning: the mass M of the dark matter halo (or the characteristic temperature T_0), the characteristic scale radius a, the cooling radius in units of a (0<alpha<1), the central temperature in units of T_0 (0<t<1), and the asymptotic baryon fraction in units of the cosmic value (f~1). It is shown that our model is able to reproduce the three-dimensional density and temperature profiles inferred from X-ray observations of real clusters within a 20 per cent accuracy over most of the radial range. Some possible applications are briefly discussed.Comment: 7 pages, 4 figures, submitted to MNRA

Long range scattering effects on spin Hall current in pp-type bulk semiconductors

Employing a nonequilibrium Green's function approach, we examine the effects of long-range hole-impurity scattering on spin-Hall current in $p$-type bulk semiconductors within the framework of the self-consistent Born approximation. We find that, contrary to the null effect of short-range scattering on spin-Hall current, long-range collisions do produce a nonvanishing contribution to the spin-Hall current, which is independent of impurity density in the diffusive regime and relates only to hole states near the Fermi surface. The sign of this contribution is opposite to that of the previously predicted disorder-independent spin-Hall current, leading to a sign change of the total spin-Hall current as hole density varies. Furthermore, we also make clear that the disorder-independent spin-Hall effect is a result of an interband polarization directly induced by the dc electric field with contributions from all hole states in the Fermi sea.Comment: 9 pages, 1 figur