Uncovering the expression patterns of chimeric transcripts using surveys of affymetrix GeneChips.

BACKGROUND: A chimeric transcript is a single RNA sequence which results from the transcription of two adjacent genes. Recent studies estimate that at least 4% of tandem human gene pairs may form chimeric transcripts. Affymetrix GeneChip data are used to study the expression patterns of tens of thousands of genes and the probe sequences used in these microarrays can potentially map to exotic RNA sequences such as chimeras. RESULTS: We have studied human chimeras and investigated their expression patterns using large surveys of Affymetrix microarray data obtained from the Gene Expression Omnibus. We show that for six probe sets, a unique probe mapping to a transcript produced by one of the adjacent genes can be used to identify the expression patterns of readthrough transcripts. Furthermore, unique probes mapping to an intergenic exon present only in the MASK-BP3 chimera can be used directly to study the expression levels of this transcript. CONCLUSIONS: We have attempted to implement a new method for identifying tandem chimerism. In this analysis unambiguous probes are needed to measure run-off transcription and probes that map to intergenic exons are particularly valuable for identifying the expression of chimeras

Acute Auditory Stimulation with Different Styles of Music Influences Cardiac Autonomic Regulation in Men

Background: No clear evidence is available in the literature regarding the acute effect of different styles of music on cardiac autonomic control. Objectives: The present study aimed to evaluate the acute effects of classical baroque and heavy metal musical auditory stimulation on Heart Rate Variability (HRV) in healthy men. Patients and Methods: In this study, HRV was analyzed regarding time (SDNN, RMSSD, NN50, and pNN50) and frequency domain (LF, HF, and LF / HF) in 12 healthy men. HRV was recorded at seated rest for 10 minutes. Subsequently, the participants were exposed to classical baroque or heavy metal music for five minutes through an earphone at seated rest. After exposure to the first song, they remained at rest for five minutes and they were again exposed to classical baroque or heavy metal music. The music sequence was random for each individual. Standard statistical methods were used for calculation of means and standard deviations. Besides, ANOVA and Friedman test were used for parametric and non-parametric distributions, respectively. Results: While listening to heavy metal music, SDNN was reduced compared to the baseline (P = 0.023). In addition, the LF index (ms2 and nu) was reduced during exposure to both heavy metal and classical baroque musical auditory stimulation compared to the control condition (P = 0.010 and P = 0.048, respectively). However, the HF index (ms2) was reduced only during auditory stimulation with music heavy metal (P = 0.01). The LF/HF ratio on the other hand decreased during auditory stimulation with classical baroque music (P = 0.019). Conclusions: Acute auditory stimulation with the selected heavy metal musical auditory stimulation decreased the sympathetic and parasympathetic modulation on the heart, while exposure to a selected classical baroque music reduced sympathetic regulation on the heart

Estabilidade oxidativa de biodiesel de ésteres etílicos de ácidos graxos de soja

Biodiesel consists of long-chain fatty acid esters, derived from renewable sources such as vegetable oils, and its utilization is associated to the substitution of the diesel oil in engines. Depending on the raw material, biodiesel can contain more or less unsaturated fatty acids in its composition, which are susceptible to oxidation reactions accelerated by exposition to oxygen and high temperatures, being able to change into polymerized compounds. The objective of this work was to determine the oxidative stability of biodiesel produced by ethanolysis of neutralized, refined, soybean frying oil waste, and partially hydrogenated soybean frying oil waste. The evaluation was conducted by means of the Rancimat® equipment, at temperatures of 100 and 105ºC, with an air flow of 20 L h-1. The fatty acid composition was determined by GC and the iodine value was calculated. It was observed that even though the neutralized, refined and waste frying soybean oils presented close comparable iodine values, biodiesel presented different oxidative stabilities. The biodiesel from neutralized soybean oil presented greater stability, followed by the refined and the frying waste. Due to the natural antioxidants in its composition, the neutralized soybean oil promoted a larger oxidative stability of the produced biodiesel. During the deodorization process, the vegetable oils lose part of these antioxidants, therefore the biodiesel from refined soybean oil presented a reduced stability. The thermal process degrades the antioxidants, thus the biodiesel from frying waste oil resulted in lower stability, the same occuring with the biodiesel from partially hydrogenated waste oil, even though having lower iodine values than the other.Biodiesel consiste em ésteres de ácidos graxos de cadeia longa, proveniente de fontes renováveis como óleos vegetais, e sua utilização está associada à substituição do diesel em motores. Dependendo da matéria-prima, o biodiesel pode conter mais ou menos ácidos graxos insaturados em sua composição, que são suscetíveis a reações de oxidação aceleradas pela exposição ao oxigênio e altas temperaturas, podendo resultar em compostos poliméricos prejudiciais ao motor. O objetivo deste trabalho foi avaliar a estabilidade oxidativa do biodiesel obtido pela etanólise dos óleos de soja neutro, refinado, usado em fritura, e óleo parcialmente hidrogenado usado em fritura. A avaliação foi feita através do equipamento Rancimat®, nas temperaturas de 100 e 105ºC, com fluxo de ar de 20 L h-1. A composição em ácidos graxos foi determinada por CG e o índice de iodo calculado. Embora os óleos de soja neutro, refinado e usado em fritura apresentassem índices de iodo próximos, a estabilidade oxidativa do biodiesel comportou-se de maneira distinta. O biodiesel de óleo neutro apresentou maior estabilidade, seguido pelo refinado e usado em fritura. Por conter antioxidantes naturais em sua composição, o óleo neutro de soja proporcionou uma estabilidade oxidativa maior ao biodiesel produzido. O proveniente de óleo refinado - que pelo processo de desodorização perde parte destes antioxidantes - apresentou menor estabilidade. O processo térmico degrada os antioxidantes, resultando em menor estabilidade ao biodiesel de óleo de fritura, ocorrendo o mesmo com o biodiesel de óleo hidrogenado usado em fritura, embora este apresentasse índice de iodo inferior aos demais

Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight

Indexación: Web of Science; PubMedBackground Berry size is considered as one of the main selection criteria in table grape breeding programs. However, this is a quantitative and polygenic trait, and its genetic determination is still poorly understood. Considering its economic importance, it is relevant to determine its genetic architecture and elucidate the mechanisms involved in its expression. To approach this issue, an RNA-Seq experiment based on Illumina platform was performed (14 libraries), including seedless segregants with contrasting phenotypes for berry weight at fruit setting (FST) and 6–8 mm berries (B68) phenological stages. Results A group of 526 differentially expressed (DE) genes were identified, by comparing seedless segregants with contrasting phenotypes for berry weight: 101 genes from the FST stage and 463 from the B68 stage. Also, we integrated differential expression, principal components analysis (PCA), correlations and network co-expression analyses to characterize the transcriptome profiling observed in segregants with contrasting phenotypes for berry weight. After this, 68 DE genes were selected as candidate genes, and seven candidate genes were validated by real time-PCR, confirming their expression profiles. Conclusions We have carried out the first transcriptome analysis focused on table grape seedless segregants with contrasting phenotypes for berry weight. Our findings contributed to the understanding of the mechanisms involved in berry weight determination. Also, this comparative transcriptome profiling revealed candidate genes for berry weight which could be evaluated as selection tools in table grape breeding programs.http://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-016-0789-

Pollen viability and germination in Jatropha ribifolia and Jatropha mollissima (Euphorbiaceae): Species with potential for biofuel production

The aim of this work is to assess pollen viability using the staining  technique and in vitro germination with different concentrations of sucrose in Jatropha ribifolia and Jatropha mollissima, contributing to the knowledge of the reproductive biology and subsidizing their conservation,  management and utilization. Pollen viability was measured by dye method. Acetocarmine, acetic orcein and cotton-blue stain were used. The culture medium for pollen germination was solidificated by the addition of 1% agar combined with 0 (control), 10, 20, 30 and 40% of sucrose. The data were submitted to analysis of variance at 5% probability. All dyes used in this experiment allowed easy differentiation between fertileand non fertile pollen. The rate of formation of pollen tubes was higher in medium with 10% of sucrose for both species because the trend is that the sucrose concentration increases the supply of carbon, changes the osmotic potential and inhibits the formation of pollen tube in vitro.Key words: Plant reproduction, male gametophyte, hybridization, germplasm

The phases of deuterium at extreme densities

We consider deuterium compressed to higher than atomic, but lower than nuclear densities. At such densities deuterium is a superconducting quantum liquid. Generically, two superconducting phases compete, a "ferromagnetic" and a "nematic" one. We provide a power counting argument suggesting that the dominant interactions in the deuteron liquid are perturbative (but screened) Coulomb interactions. At very high densities the ground state is determined by very small nuclear interaction effects that probably favor the ferromagnetic phase. At lower densities the symmetry of the theory is effectively enhanced to SU(3), and the quantum liquid enters a novel phase, neither ferromagnetic nor nematic. Our results can serve as a starting point for investigations of the phase dynamics of deuteron liquids, as well as exploration of the stability and dynamics of the rich variety of topological objects that may occur in phases of the deuteron quantum liquid, which range from Alice strings to spin skyrmions to Z_2 vortices.Comment: 9 pages, 6 figures; v2: fixed typo

The phylogenetically-related pattern recognition receptors EFR and XA21 recruit similar immune signaling components in monocots and dicots

During plant immunity, surface-localized pattern recognition receptors (PRRs) recognize pathogen-associated molecular patterns (PAMPs). The transfer of PRRs between plant species is a promising strategy for engineering broad-spectrum disease resistance. Thus, there is a great interest in understanding the mechanisms of PRR-mediated resistance across different plant species. Two well-characterized plant PRRs are the leucine-rich repeat receptor kinases (LRR-RKs) EFR and XA21 from Arabidopsis thaliana (Arabidopsis) and rice, respectively. Interestingly, despite being evolutionary distant, EFR and XA21 are phylogenetically closely related and are both members of the sub-family XII of LRR-RKs that contains numerous potential PRRs. Here, we compared the ability of these related PRRs to engage immune signaling across the monocots-dicots taxonomic divide. Using chimera between Arabidopsis EFR and rice XA21, we show that the kinase domain of the rice XA21 is functional in triggering elf18-induced signaling and quantitative immunity to the bacteria Pseudomonas syringae pv. tomato (Pto) DC3000 and Agrobacterium tumefaciens in Arabidopsis. Furthermore, the EFR:XA21 chimera associates dynamically in a ligand-dependent manner with known components of the EFR complex. Conversely, EFR associates with Arabidopsis orthologues of rice XA21-interacting proteins, which appear to be involved in EFR-mediated signaling and immunity in Arabidopsis. Our work indicates the overall functional conservation of immune components acting downstream of distinct LRR-RK-type PRRs between monocots and dicots

Utilização da programação funcional no mundo dos blocos geométricos

Dissertação (mestrado) - Universidade Federal de Santa Catarina, Centro Tecnológico. Programa de Pós-Graduação em Ciência da Computação

Gestão de custos

É notório que, na atualidade, a econômia é muito instável, exigindo que as empresas busquem constantemente redução nos custos que são inerente a ela, diante disso, elas buscam incansavelmente elaborar meios para a efetivação da redução de seus custos, sejam eles fixos ou variáveis. Essa condição é denominada de gestão de custos. Uma gestão de custos tem por finalidade propiciar meios racionais e sistemáticos de redução de custos, permitindo ao empreendedor tornar a empresa mais dinâmica no mercado, ofereendo ao consumidor produtos e serviços de qualidade com preços que permitem a sua aquisição, permitido, outrossim, a tomada de decisão quanto a manutenção de um produto ou seviço no mercado, portanto, a a gestão de custos é uma ferramenta de grande relevância como estratégia competitiva no mercado para se sobressair à concorrência. Assim sendo, de início foi conceituado o que vem a ser custos para a empresa, bem como exposto o conceito de estratégia competitiva, para que posteriormente fosse destacado como a gestão de custos contriui como estratégia competitiva para a empresa no mercado. o objetivo deste artigo é o de destacar a relevância da gestão de custos para que empresa possa se manter dinâmica no segmento em que atua, utilizando-a como estratégia competitiva consequentemente obter sucesso no mercado. A metodologia utilizada foi a pesquisa descritiva por meio de investigação bibliográfica, onde se utilizou o método da dedução, em que por meio da concepção geral das teorias expostas, foi exposta uma posição subjetiva acerca do tema proposto

VIBRIO FISCHERI: Uma abordagem prática através da Biotecnologia

Vibrio fischeri é uma bactéria marinha luminescente e é utilizada em ensaios de detecção de compostos tóxicos que possam estar presentes em águas e efluentes. A luminescência está ligada ao metabolismo bacteriano,que é sensível à ação de substâncias tóxicas, há redução na emissão de luz. Quanto mais tóxica for a amostra, maiora perda de luminescência. Essa redução é rapidamente desencadeada, assim, Vibrio fischeri é utilizada em avaliações prévias para identificação de toxicidade em amostras ambientais, de extrema importância para o diagnóstico de toxicidade em estações de tratamento de efluentes e em acidentes ambientais